Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31482
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   3.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   4.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   7.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   7.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   9.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 200 RPYSEHKTTDGVIEPERIVAPSI 268
           RP S H T D  IE      PS+
Sbjct: 656 RPISCHTTPDSFIEAPNKTLPSL 678


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 209 SEHKTTDGVIEPERIVAPSINTFN 280
           SEH +T   +   +I  P+  +FN
Sbjct: 286 SEHTSTPNFLSEAKIFPPTPGSFN 309


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 44  FFYCKATGTIDYD 6
           FFYC AT   ++D
Sbjct: 312 FFYCAATKNPNFD 324


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -1

Query: 280 IKCIDRWRYYSFGFNN 233
           +  I +W+Y  + F+N
Sbjct: 36  LNVIHKWKYLDYDFDN 51


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 87  WLN*YYIII 113
           W+N YYI+I
Sbjct: 72  WMNVYYIVI 80


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 300 LIPDRNYAPLLT 335
           ++PDR +AP  T
Sbjct: 239 VMPDRTFAPFFT 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,150
Number of Sequences: 438
Number of extensions: 1613
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)