Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31480
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 32 0.074
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 31 0.23
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 28 1.6
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 2.1
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch... 27 3.7
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 26 6.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.5
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 8.5
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 8.5
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 32.3 bits (70), Expect = 0.074
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Frame = +3
Query: 24 RALQEDGLPDAATEL--SAPVATKVFTAPTSKRP---APTPKPTKQ---SDAKPKGKQTT 179
+ ++E +PD E SAP +TK AP +K P +P PKP K +KPK +T
Sbjct: 154 KPIEEKPMPDLGAEQKESAPSSTK--PAPDAKEPEFSSPKPKPAKSEPVKQSKPKATETA 211
Query: 180 FVNSL--HEEHIQQSNSFKRL 236
+S +E+ ++ + R+
Sbjct: 212 RPSSFSRNEDRVKMNRMRLRI 232
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 30.7 bits (66), Expect = 0.23
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 39 DGLPDAATELSAPVATKVFTAPTSKRPAPTP-KPTKQSDAKPKGKQ-TTFVNSLHEEHIQ 212
D + +A+ +A V T+P S P P +P++Q K TTFV+S+H +Q
Sbjct: 169 DSVSTSASSSNASNTVSV-TSPASSSATPLPNQPSQQQFLVSKNDAFTTFVHSVHNTPMQ 227
Query: 213 QS 218
QS
Sbjct: 228 QS 229
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 75 PVATKVFTAPT-SKRPAPTPKPTKQSDAKPKGK 170
P T+ +T P S P P KP+++S+ PK K
Sbjct: 478 PHVTRDYTQPAASATPVPKEKPSEKSEKPPKKK 510
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 60 TELSAPVATKVFTAPTSKRPAPTPKPTKQSDAK 158
TE AP T T + P P PTK +DA+
Sbjct: 158 TETPAPKVTSESTKKETAAPPPQETPTKSADAE 190
>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 368
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 90 VFTAPTSKRPAPTPKPTKQSDAKPKGKQTTFVNSLHEEHIQQSNSF 227
++T P P+PTK + +G F +++ EE ++++N F
Sbjct: 294 LWTVPLDADVKALPEPTKITVPTVQGNYRDFYDAVFEEILKKANEF 339
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 93 FTAPTSKRPAPTPKPTKQSDAKPKGKQTTFVNSLHEEHIQQSNS 224
F PTSK P P +S + + + + +N L E+ SNS
Sbjct: 308 FRHPTSKPLPPKPLSRSKSSSLSRNQTRSQLNDLSAENDSTSNS 351
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 99 APTSKRPAPTPKPTKQSDAKP 161
A KRP P P P++++ KP
Sbjct: 305 AANKKRPPPPPPPSRRNRGKP 325
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 8.5
Identities = 19/74 (25%), Positives = 29/74 (39%)
Frame = +3
Query: 45 LPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKGKQTTFVNSLHEEHIQQSNS 224
+P A + P A V + RP P P P + P T+ N E ++ + S
Sbjct: 52 VPQVAQKAFDPQAATVSESANVSRPTPAPVPPAGNTNTP---TTSNSNQNLENNVTSAAS 108
Query: 225 FKRLMFNVLGDTEF 266
++ N G EF
Sbjct: 109 MPAIL-NAAGQLEF 121
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -2
Query: 492 IYFN*NSSNRPIPGYLNFKMMARPVF---FCQLATHEFHEL 379
IYF RP+PG N K+ +F + ++ + H+L
Sbjct: 417 IYFRSQPGMRPLPGQCNVKVRRDHIFEDSYAEIMRYSAHDL 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,349
Number of Sequences: 5004
Number of extensions: 44053
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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