Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31480
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved olig... 35 0.052
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 32 0.37
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 32 0.37
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 32 0.37
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 32 0.37
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 32 0.37
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z68217-1|CAA92465.1| 461|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical... 29 4.5
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 28 6.0
AF099915-8|AAC68768.2| 231|Caenorhabditis elegans Hypothetical ... 28 7.9
>U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 5 protein.
Length = 580
Score = 35.1 bits (77), Expect = 0.052
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 3 PRQVRTYRALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKP 161
PR+ RT R ++D P+A E A +A + ++P P P+P +++A P
Sbjct: 105 PRKGRTPRKEKKDVEPEAEPEPEADIAPEPEKVAIVEKPEPKPEPITETEASP 157
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 54 AATELSAPVATKVFTAPTSKRPAP-TPKPTKQSDAKPKGKQTTFVNSLHEEHIQQ 215
+ +E S A+ V +APT P+P T P K + P G TT ++H QQ
Sbjct: 9 SCSEPSTSQASTVVSAPTLPPPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQ 63
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 54 AATELSAPVATKVFTAPTSKRPAP-TPKPTKQSDAKPKGKQTTFVNSLHEEHIQQ 215
+ +E S A+ V +APT P+P T P K + P G TT ++H QQ
Sbjct: 11 SCSEPSTSQASTVVSAPTLPPPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQ 65
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 54 AATELSAPVATKVFTAPTSKRPAP-TPKPTKQSDAKPKGKQTTFVNSLHEEHIQQ 215
+ +E S A+ V +APT P+P T P K + P G TT ++H QQ
Sbjct: 8 SCSEPSTSQASTVVSAPTLPPPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQ 62
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 54 AATELSAPVATKVFTAPTSKRPAP-TPKPTKQSDAKPKGKQTTFVNSLHEEHIQQ 215
+ +E S A+ V +APT P+P T P K + P G TT ++H QQ
Sbjct: 46 SCSEPSTSQASTVVSAPTLPPPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQ 100
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 54 AATELSAPVATKVFTAPTSKRPAP-TPKPTKQSDAKPKGKQTTFVNSLHEEHIQQ 215
+ +E S A+ V +APT P+P T P K + P G TT ++H QQ
Sbjct: 120 SCSEPSTSQASTVVSAPTLPPPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQ 174
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 48 PDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKG 167
P A A V TK TAP SK P P P + + A P+G
Sbjct: 290 PRTAVPSRATVLTK--TAPASKAPTRAPVPARSAPAPPRG 327
>Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical
protein F32A7.5b protein.
Length = 764
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 48 PDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKG 167
P A A V TK TAP SK P P P + + A P+G
Sbjct: 290 PRTAVPSRATVLTK--TAPASKAPTRAPVPARSAPAPPRG 327
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 48 PDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKG 167
P A A V TK TAP SK P P P + + A P+G
Sbjct: 290 PRTAVPSRATVLTK--TAPASKAPTRAPVPARSAPAPPRG 327
>Z68217-1|CAA92465.1| 461|Caenorhabditis elegans Hypothetical
protein F58G6.1 protein.
Length = 461
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +3
Query: 81 ATKVFTAPTSKRPAPTPKPTKQSDAKPKGKQTTFVNSLH 197
+T+V AP K P PTPKP K K FV S H
Sbjct: 370 STEVEEAPKKKDPEPTPKPL-DGITNEKRKTLYFVTSTH 407
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 33 QEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPK 164
Q LP T+ APV +P + +P P P P+ + + +PK
Sbjct: 613 QSTALPQQTTD--APVDPVTEASPLNPQPPPPPSPSPEPEPEPK 654
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 45 LPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKP 161
LPD T+ AT+V P+P P+P +S +P
Sbjct: 566 LPDETTDAPEEPATEVPNPQPPSPPSPEPEPEPKSTPEP 604
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 27 ALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKGKQTTFV-NSLHEE 203
A+Q + A + SAPVA +A + + PTP+ + K ++T +V + H+E
Sbjct: 51 AVQPEVAEPVAVQESAPVAP--VSATEAPKKEPTPEEDLVAPLAKKFQRTVYVDDGTHKE 108
Query: 204 HI 209
HI
Sbjct: 109 HI 110
>AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical
protein Y53G8AR.1 protein.
Length = 272
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 51 DAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAK 158
D L+ P T T T K P TPKP K+ D K
Sbjct: 191 DGLCSLNPPTTT---TTTTVKPPPATPKPAKEKDPK 223
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 69 SAPVATKVFTA-PTSKRPAPTPKPTKQSDAKPKGK 170
S P +++V A P++ P P PKP + D KP K
Sbjct: 666 SKPSSSEVPPAEPSAPEPKPAPKPDPKPDPKPDPK 700
>AF099915-8|AAC68768.2| 231|Caenorhabditis elegans Hypothetical
protein E02H9.2 protein.
Length = 231
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +3
Query: 51 DAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKGKQTT 179
D L AP T T P K P TPKP Q D K K +
Sbjct: 185 DGLCSLGAPTTTTTTTTP--KPPPATPKP-DQKDPKDDAKSAS 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,676,464
Number of Sequences: 27780
Number of extensions: 254606
Number of successful extensions: 1260
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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