Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31480
(736 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 27 0.18
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 23 2.3
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 22 5.2
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 22 5.2
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 22 5.2
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 22 5.2
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 22 5.2
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 6.9
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 6.9
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 9.1
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 27.1 bits (57), Expect = 0.18
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 60 TELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKG 167
T+ P+ T+ P+S P P P P + A +G
Sbjct: 2 TQQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRG 37
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.4 bits (48), Expect = 2.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 372 CHTTHGTHVLLVDKKKPVLPSS*NLNNR 455
CHTT + + +K P LPS+ N++
Sbjct: 660 CHTTPDSFIEAPNKTLPSLPSTLTKNSK 687
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.2 bits (45), Expect = 5.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 121 RLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSN 231
R +R +R+RKE +R + N IH+N
Sbjct: 57 RKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNN 93
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.2 bits (45), Expect = 5.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 121 RLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSN 231
R +R +R+RKE +R + N IH+N
Sbjct: 57 RKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNN 93
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 22.2 bits (45), Expect = 5.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 121 RLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSN 231
R +R +R+RKE +R + N IH+N
Sbjct: 57 RKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNN 93
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.2 bits (45), Expect = 5.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 121 RLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSN 231
R +R +R+RKE +R + N IH+N
Sbjct: 57 RKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNN 93
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 22.2 bits (45), Expect = 5.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 121 RLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSN 231
R +R +R+RKE +R + N IH+N
Sbjct: 290 RKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNN 326
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 6.9
Identities = 12/43 (27%), Positives = 15/43 (34%)
Frame = +1
Query: 121 RLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSNASCSMY 249
R R R S RNR+ K+ N + SC Y
Sbjct: 230 RYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRY 272
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 6.9
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +1
Query: 112 RGQRLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSNASCSMY 249
R R +R R+R+E +R + N IH+N + Y
Sbjct: 287 REYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNY 332
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.4 bits (43), Expect = 9.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 124 LHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSNASCSMYLG 255
L ++ +S T+++ E S +H+ N ++H S S G
Sbjct: 379 LPKHLPTSLTKSKMEVMELSDLHHPNCKINRKVHHTTSSSSAAG 422
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,865
Number of Sequences: 438
Number of extensions: 3104
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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