Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31477
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.2  
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ...    27   2.9  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   3.8  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    26   3.8  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    26   5.0  
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    25   6.6  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   8.8  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   8.8  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 441 PEAVPKLPTATEPAPATLQPRK-TRSMLRSASCKPSWRADPPPDKTSHTSRN 593
           P + P LP+A  P P  + P   +++ + + S +PS  A P     + TS +
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSES 235



 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 441 PEAVPKLPTATEPAPATLQPRKTRSMLRSASCKPSWRADPPPDKTSHTSR 590
           P AVP +P    P P +  P    S   S+   P+  A   P+ TS + +
Sbjct: 191 PSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHA---PNVTSESPK 237


>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
           Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 416 LQIELQTLAGGSAEAADGYGASAGNASAPEDEIDAA 523
           L   ++++ GGS+  A  Y  + G+ +  +DE++ A
Sbjct: 153 LMANVESIHGGSSWGAGSYAGADGSRNVSDDELEIA 188


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = +3

Query: 435 PWPEAVPKLPTATEPAPATLQPRKTRSMLRSASCKPSWRADPPPDKTSHTSRNW 596
           P PE  P  P+      +T  P   +    +A+   +    PP  ++  T R+W
Sbjct: 635 PTPETGPNKPSKNNILKSTQVPVTPKQKSSTANKGSTSSPSPPSSESKKTKRSW 688


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = +2

Query: 329 QLYQQARWQILNQEVNCTEEEMMLFAALQLQIELQTLAGGSAEAADGYGASAGNASAPED 508
           Q  Q+   Q+ +Q  N + E++      +LQ E+Q     + E  +  G +  + +  E+
Sbjct: 107 QTMQETARQLKSQSKNVSIEKIE-----KLQDEIQDYMDAAGELNEVLGQNMTDINVDEE 161

Query: 509 EIDAALCELQAQ 544
           E+DA L  LQ +
Sbjct: 162 ELDAELEALQQE 173


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 441 PEAVPKLPTATEPAPATLQPRKTRSM 518
           P   P  P  T P PA+ +P+ TR++
Sbjct: 328 PVPTPAPPVKTSPHPASYRPQPTRNV 353


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 374 NCTEEEMMLFAAL--QLQIELQTLAGGSAEAADGYGASAGNASAPEDEIDAAL 526
           + T+  ++L  AL  Q +I++ +  GG+A   D  GA    A+  ED+  +A+
Sbjct: 51  SATKTALLLQDALLGQNKIQITSEDGGAASTTDQGGAGGDQAARQEDKPRSAI 103


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 423 SSYRPWPEAVPKLPTATEPAPATLQPRKTRSMLRSASCKPSWRADPPPDK 572
           S  RP  +A    P   E      + + TRS + +++ +P  +  P PDK
Sbjct: 225 SETRPLAQASRATPDIKEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDK 274


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 531 SCKPSWRADPPPDKTSHTSRNWPDTS 608
           +C+ +WR+  P    S +SR  PD S
Sbjct: 90  ACRSNWRSIQPNINDSISSRGHPDAS 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,120
Number of Sequences: 5004
Number of extensions: 38350
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)