Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31477
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   2e-22
SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)               47   1e-05
SB_4188| Best HMM Match : 7tm_1 (HMM E-Value=9e-06)                    30   1.3  
SB_15551| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)                   29   3.0  
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)                      29   3.0  
SB_32192| Best HMM Match : Guanylin (HMM E-Value=4.9)                  29   3.0  
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074)                    28   5.3  
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_24173| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_57008| Best HMM Match : Sushi (HMM E-Value=0.016)                   28   7.0  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   27   9.2  
SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)              27   9.2  
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)                     27   9.2  
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)                  27   9.2  

>SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score =  103 bits (246), Expect = 2e-22
 Identities = 58/129 (44%), Positives = 81/129 (62%), Gaps = 6/129 (4%)
 Frame = +2

Query: 239 VREWDTLQLRFKFYSFFDLTPRAQDAPRLNQLYQQARWQILNQEVNCTEEEMMLFAALQL 418
           V+E+DT+ LR+K+Y+FFDL P+  D  R+NQLY+QA+W IL +EV CTEEEMM FAA+Q 
Sbjct: 2   VQEFDTIYLRYKYYTFFDLNPKV-DEIRINQLYEQAKWSILTEEVECTEEEMMSFAAIQF 60

Query: 419 QIELQTLAGGSAEAADGYGASAGNASAPEDEIDAALCELQAQLEGG-----PPAR-QDIT 580
           Q+++ + +  S            N    +D+IDAAL +LQ  LEG       PA+   + 
Sbjct: 61  QVKILSASPQS------------NIPEDDDDIDAALSDLQLTLEGSSHSTTSPAKVNSLN 108

Query: 581 HVPELAGYL 607
            VPE+  YL
Sbjct: 109 TVPEIMDYL 117


>SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)
          Length = 2278

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 26/78 (33%), Positives = 43/78 (55%)
 Frame = +2

Query: 194 NVGWLDSSLSIMEQYVREWDTLQLRFKFYSFFDLTPRAQDAPRLNQLYQQARWQILNQEV 373
           +V WLD   ++ EQ   +  T+ +R K++ + D     +D  +LN LY Q R  IL+   
Sbjct: 151 DVQWLDHDKTLREQGTDDSHTVVMRRKYF-YSDQNVDIKDPVQLNLLYVQCRDGILDGTH 209

Query: 374 NCTEEEMMLFAALQLQIE 427
            CT+EE     A+Q+Q++
Sbjct: 210 PCTQEEASQLGAIQIQVQ 227


>SB_4188| Best HMM Match : 7tm_1 (HMM E-Value=9e-06)
          Length = 522

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +2

Query: 140 QSRESLLSPKSLLERARMNVGWLDSS-LSIMEQYVREW--DTLQLRFKFYSFF 289
           +S +   +PK++LE  + +  W++ + LS+ + Y+RE   D L++   FY FF
Sbjct: 329 ESLDDSKTPKAVLEAFKKS-NWINKTCLSVKDSYMRETSKDLLEVANAFYEFF 380


>SB_15551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 423 SSYRPWPEAVPKLPTATEPAPATLQPRKTRSMLRSASCKPSWRADPPPDKTSHTSRNWPD 602
           ++Y P P     +P+  EP P+TL+P +T       +C  S R  PP D     +  +P 
Sbjct: 48  NTYEPIPSDYEPVPSDYEPVPSTLEPIQTPES-PYQTCTGSQR--PPRDLYQTPTIPYPT 104

Query: 603 TSS 611
            +S
Sbjct: 105 PTS 107


>SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)
          Length = 631

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +3

Query: 435 PWPEAVPKLPTATEPAPATLQPRKTRSMLRSASCKPSWRADPPPDKTS 578
           P PE VP  P    P P T+ P+         S  P    +PP  KTS
Sbjct: 152 PEPETVPPQPETVPPQPETVPPQPGSEEPEPVSQAP----EPPKPKTS 195


>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
          Length = 1936

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -3

Query: 213  ESNHPTFILARSRRDFGESNDSRDCESGSIGESARDSSAKESRASMEAARGGVPQYPPSL 34
            E++ P        R      D  D ESG+     R SSA++S+     A    P   P +
Sbjct: 1552 EADKPAEKSQEHSRKSQRGRDKDDRESGAKSRRERQSSARKSKGGAHGATSPPPTVAPQV 1611

Query: 33   D 31
            D
Sbjct: 1612 D 1612


>SB_32192| Best HMM Match : Guanylin (HMM E-Value=4.9)
          Length = 160

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -3

Query: 234 CSMMD--SEESNHPTFILARSRRDFGESNDSRDCESGSIGESARDSSAKESRASMEAARG 61
           CS  D  S+ +N  T   A +    G  +D      G +G  AR +    SR S   ARG
Sbjct: 80  CSTGDLPSQSTNDSTNQSADAMVSRGVMSDGECVSRGYVGSPARRNVV--SRVSGPPARG 137

Query: 60  GVPQYPPS 37
            +P  PPS
Sbjct: 138 ALPPTPPS 145


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 165 GESNDSRDC-ESGSIGESARDSSAKESRASMEAARGGVPQ 49
           GES +S +  ESG  GES     ++++  S    R G+PQ
Sbjct: 707 GESGESGESGESGESGESGDSGESQDNADSSIQKRNGIPQ 746



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 216  EESNHPTFILARSRRDFGESNDSRDC-ESGSIGESARDSSAKESRASMEAARGG 58
            E +N    ++  S+    +SN+S +  ESG  GES     + ES  S E+   G
Sbjct: 877  ETANEKAGMVKNSKASKEDSNESGESGESGKSGESGESGESGESGESGESGESG 930


>SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074)
          Length = 532

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 180 SRRDFGESNDSR-DCESGSIGESARDSSAKESRASM 76
           SR   GE   S  D ESGS+  S+  SS   SRASM
Sbjct: 224 SRPVSGEKGSSHEDSESGSVRPSSASSSIAGSRASM 259


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 443 GGSAEAADGYGASAGNASAPEDEIDAALCELQAQLEGGPPARQDIT 580
           GG+   ADG   S G A+A   ++  +   ++ ++EGG    +D+T
Sbjct: 406 GGATRNADGVTGSGGGATAMRGDVTGSERNVR-KIEGGGTGIEDVT 450


>SB_24173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 122 PIEPDSQSRESLLSPKSLLERARMNVGWLDSSLSIMEQYVR 244
           P+ P S+SR +  S +  +      +GW+ S+ ++  QY R
Sbjct: 44  PVSPGSKSRSNTRSHRLEMSGFFQILGWMGSTANVTRQYQR 84


>SB_57008| Best HMM Match : Sushi (HMM E-Value=0.016)
          Length = 88

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 483 PATLQPRKTRSMLRSASCKPSWRADPPPDKTSHTSRNWPDT 605
           P   Q R     + + SC P +R   PP K    +  W DT
Sbjct: 40  PTCTQARMRAGTVCTFSCPPFYRVHGPPIKECMDTGTWTDT 80


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/76 (27%), Positives = 30/76 (39%)
 Frame = -3

Query: 252  SHSRTYCSMMDSEESNHPTFILARSRRDFGESNDSRDCESGSIGESARDSSAKESRASME 73
            S  RT CS  + EES   T  L    +D    N+ R  +   + E  R     + RAS+ 
Sbjct: 1164 SGDRT-CSQSEQEESIRSTQPLISQLQDNKSINEERKRKRQEMEEKKRRIMENQKRASLR 1222

Query: 72   AARGGVPQYPPSLDPS 25
               G       S +P+
Sbjct: 1223 RGNGSEDDRQSSPEPT 1238


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = -3

Query: 324 SRG-AS*ALGVRSKNE*NLNRS*SVSHSRTYCSMMDSEESNHPTFILARSRRDFGESNDS 148
           SRG A    G RS++  + +RS S S SR+         S   +   +RSR      + S
Sbjct: 32  SRGKAQSPSGSRSRSR-SRSRSQSQSRSRSRSRSRSRSRSRSRSRSSSRSRSRSRSRSRS 90

Query: 147 RDCESGSIGESARDSSAKESRASMEAARGG 58
           R    GS   +   S A   +++  +++GG
Sbjct: 91  RSLSGGSSQSTRNSSPAGSKKSTPRSSKGG 120


>SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)
          Length = 597

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = +3

Query: 444 EAVPKLPTATEPAPATLQPR---KTRSMLRSAS---CKPSWRADPP-PDK 572
           EA P  P  T P PA   P+   + RS L S S    KP+    PP PDK
Sbjct: 218 EASPNTPPKTAPKPARSSPKPAAEFRSPLESGSNFVIKPAPGEPPPKPDK 267


>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
          Length = 1381

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = +3

Query: 444 EAVPKLPTATEPAPATLQPR---KTRSMLRSAS---CKPSWRADPP-PDK 572
           EA P  P  T P PA   P+   + RS L S S    KP+    PP PDK
Sbjct: 163 EASPNTPPKTAPKPARSSPKPAAEFRSPLESGSNFVIKPAPGEPPPKPDK 212


>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
          Length = 580

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 268 VQVLFVLRPDAESS-GRASTQPAVPAGTLA 354
           +QVLF   P   +  G+A  QP  P GTLA
Sbjct: 175 IQVLFPFEPPPPTMLGKADIQPLEPKGTLA 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,240,931
Number of Sequences: 59808
Number of extensions: 325142
Number of successful extensions: 1299
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)