Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31477
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.59 
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    24   1.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 477 PAPATLQPRKTRSMLRSASCKPSWRADPPP-DKTSHTSR 590
           P P T  P   + +LR A  + + R  P P D+T+   R
Sbjct: 157 PTPVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAKKPR 195


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 530 ELQAQLEGGPPARQ-DITHVPELAGYLKYL 616
           +L A+  GG  +R  DI H P LA  L+YL
Sbjct: 36  DLFARCMGGINSRNMDIEHDPGLAAVLQYL 65


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 537 KPSWRADPPPDKTSH 581
           +P WRA P P K  H
Sbjct: 43  RPHWRAFPAPGKHFH 57


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 271 QVLFVLRPDAESSGRASTQPAVPAGTL 351
           + L  +R    S  RAST+  +P GTL
Sbjct: 527 RALEAIRSGQTSVQRASTEFGIPTGTL 553


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 473 GASAGNASAPEDEIDAALCELQA 541
           GA  G  +  E+E+ AAL ++Q+
Sbjct: 583 GAGGGRRAYTEEELQAALRDIQS 605


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 322 TQPAVPAGTLADPQPGGQLYRG 387
           T P+VP G+      GG L+ G
Sbjct: 53  TPPSVPVGSAVAGTAGGALFPG 74


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 540 PSWRADPPPDKTSH 581
           P WRA P P K  H
Sbjct: 44  PHWRAFPAPGKHFH 57


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
          protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 14 STQSDGSSDGGYCGTPP 64
          S  S+ S   GYCG  P
Sbjct: 35 SRNSNRSESSGYCGRRP 51


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 438 WPEAVPKLPTATEPAPAT 491
           W E +PKL    +P P T
Sbjct: 577 WNEFLPKLKGIPDPXPNT 594


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 14 STQSDGSSDGGYCGTPP 64
          S  S+ S   GYCG  P
Sbjct: 35 SRNSNRSESSGYCGRRP 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,385
Number of Sequences: 438
Number of extensions: 2833
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)