Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31476
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    32   0.076
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   2.2  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    27   2.9  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   2.9  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    26   3.8  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   5.0  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   8.8  

>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 120 GETCGSNGLPLTPSSISILGRAQR--LLS--IEHPNLCTYLDIIR 242
           GE      +P TP++ S   R QR  LL   + HPN+C  +D IR
Sbjct: 76  GEKAALKMIPFTPNNTSQTVRVQREALLGRLLRHPNICRVIDCIR 120


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 184 ARPKIDIELGVRGSPLLPQVSPG*LLAKNVHAA 86
           A P +++ +G  G+PL+P   PG ++A    AA
Sbjct: 273 AMPMMNVPMGPGGAPLVPPPPPGMVMASPSPAA 305


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 220 HKFGCSMDSSLCARPKIDIELGVRGSPLLPQVS 122
           H    SMDS+    P+ D+   VR S  +PQ S
Sbjct: 458 HYIDSSMDSNRSIEPEPDVISTVRNSSTIPQAS 490


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 167 YRTGSKGQSITSTSFTRVTLSEK 99
           + TG    S+TSTSFT VT +E+
Sbjct: 235 HTTGYAAASLTSTSFTPVTKNER 257


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 207 HPNLCTYLD--IIRGKHGKVVVSQNKI*LKS*TIRNRKIT*THFEELY*QNCSRLHFL 374
           HPN+ TYLD  ++R +H  VV+        +  I   K+T      +  + C  +  L
Sbjct: 368 HPNIVTYLDSFLVRERHLWVVMEYMNAGSLTDIIEKSKLTEAQIARICLETCKGIQHL 425


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 417 SYFNLQNLAQKYEKIKNA-IWS--SSVNIIPQNV 325
           S+F+  NL +KY  +KN   W+   S+  IP+N+
Sbjct: 172 SFFSKSNLKRKYRYLKNPDAWNLPPSLQFIPKNL 205


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 110 ESPW*NLWK*WTAPYSQFYINL 175
           +S W  LW+ W   YS F +++
Sbjct: 82  QSRWSKLWRIWNVGYSWFILSI 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,424
Number of Sequences: 5004
Number of extensions: 48481
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)