Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31476
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)                     33   0.25 
SB_29135| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)             28   7.0  

>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
          Length = 875

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = +3

Query: 45  IYKMHSDHEENYKFAACTFFAKSHPGETCGSNGLPLTPSSISILGRAQRLLSIEHPNL 218
           +YK+       YK+ AC  F        C  NG+ LT        R + LL   H  L
Sbjct: 500 VYKLSDQVFSYYKYQACNMFLNKRFKAECAKNGINLTTGREMRANRYESLLQQRHVQL 557


>SB_29135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +2

Query: 335 GIILTELLQIAFFIFSYF 388
           G++LTE+L++AF  FS+F
Sbjct: 115 GLLLTEILRVAFLSFSFF 132


>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 420 NSYFNLQNLAQKYEKIKNAIWSSS 349
           NS F + N  +  EK+ NA+W+SS
Sbjct: 734 NSKFVIPNTKEACEKVTNAVWTSS 757


>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
          Length = 1198

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 266 DYNFTMFSTYYVQVSAQIWVFYGQQSL 186
           DYN +    YY +V+A+I  +YG++++
Sbjct: 902 DYNMSRIDYYYGKVNARIEYYYGKKNV 928


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,373,292
Number of Sequences: 59808
Number of extensions: 353447
Number of successful extensions: 688
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)