Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31475
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho... 40 4e-04
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 39 7e-04
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 33 0.048
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac... 29 0.59
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 28 1.4
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 3.1
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 27 3.1
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 4.2
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 4.2
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 5.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.5
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 9.6
>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
5',5'''-p1,p6-hexaphosphate hydrolase Aps1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 39.5 bits (88), Expect = 4e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +3
Query: 306 TPSNFKPVLGGNVTYVVACVIINEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAV 485
T + F P+ G + V + ++ +VL++ AK+ + W +P G E E++ QAA+
Sbjct: 31 TKNRFNPITGARLAAGVVALSADK-RKVLLVSSAKKHPS--WVVPKGGWEADESVQQAAL 87
Query: 486 REVLEETGL 512
RE EE GL
Sbjct: 88 REGWEEGGL 96
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 429 WYLPAGRMEKGETIVQAAVREVLEETGLQC 518
W P G+++K E+ V A+REV EETG C
Sbjct: 123 WGFPKGKIDKDESDVDCAIREVYEETGFDC 152
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 32.7 bits (71), Expect = 0.048
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 354 VACVIINEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETGLQCD 521
V VI++ + +++ A G + AG +E GE++ +A VRE EE+G+ +
Sbjct: 229 VIMVILSHDMQHILLGRALRHPKGLYACLAGFLEPGESLEEAVVRETYEESGVDVE 284
>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 205
Score = 29.1 bits (62), Expect = 0.59
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 435 LPAGRMEKGETIVQAAVREVLEETG 509
+PAG ++ E+ AA+RE+ EETG
Sbjct: 87 IPAGLVDSKESCEDAAIRELREETG 111
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -1
Query: 637 NDSLSALAGVFNSPPIISPVSTNLYQEPPAVSTTSKVLRSH*RPVSSNTSLTAACTIVSP 458
ND+ + + ++P SP+++N +PP + VL P+ + T T+ P
Sbjct: 415 NDTNGSSSSSSSNPRTSSPLASNAENKPPVAQQSPPVLLPTLPPIQTTTIQTSREVAPPP 474
Query: 457 FSI 449
SI
Sbjct: 475 SSI 477
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 539 CRNRWGFLVQVCTYRRNY 592
C+ RWGFL CT R N+
Sbjct: 2151 CKKRWGFLQMPCT-RENF 2167
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 604 NSPPIISPVSTNLYQEPPAVST 539
++PP +S S N Q+PP VST
Sbjct: 109 SNPPAVSHQSKNTSQDPPYVST 130
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.2 bits (55), Expect = 4.2
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -3
Query: 476 LYNCFSFFHSASR*IPFPSAAFFCFLHHKYFIELVYN--NTSNDVGDVAAKYRFE 318
L N F F R + S LH KYF+ LV + N ND A YR E
Sbjct: 1049 LANNFRDFRRQIRKLHCASLELKSSLHFKYFLNLVLHIGNFMNDAPRRAKGYRLE 1103
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/73 (21%), Positives = 34/73 (46%)
Frame = -1
Query: 568 LYQEPPAVSTTSKVLRSH*RPVSSNTSLTAACTIVSPFSILPAGKYHFPAQLSFASCIIS 389
L+ + VS + + S + ++ + + + FS++ A K+ A +SF +C I
Sbjct: 552 LFAKDETVSEQAPIYNSTYELILASLNTSEPVPADAKFSVIVAKKFEKAACISFTACKIL 611
Query: 388 TSLNSFIITQATT 350
S + + I + T
Sbjct: 612 ESEDKYCIVVSNT 624
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 189 NSLNLLIEGLGLDSEGKDFCDFTIADQNSVAESQGIT 299
N+ N L E +GL + K F T+AD + ++ GI+
Sbjct: 221 NNANALGEHIGLWRKLKKFISHTVADMSYCLKNSGIS 257
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 424 PAQLSFASCIISTSLNSFIITQATT*VTLPPSTG 323
P +++ SC TS ++ IIT++T+ + +TG
Sbjct: 69 PVEITSTSCTTDTSASTPIITESTSSTSSASTTG 102
Score = 25.8 bits (54), Expect = 5.5
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Frame = -1
Query: 613 GVFNSP-PIISPVSTNLYQEPPAVSTTSKVLRSH*RPVSSNTSLTAACTIVSPFSILPAG 437
G +SP P S T PP ++T+ V P TS ++ T P S G
Sbjct: 326 GTSSSPLPSTSTSCTTSTSIPPTGNSTTPVT-----PTVPPTSTSSTSTPPPPASTSSTG 380
Query: 436 KYHFPAQLSFASCIISTSLNSFIITQATT*VTLPPST 326
P + SC STS+ + T+PP++
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 417
Score = 25.0 bits (52), Expect = 9.6
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Frame = -1
Query: 604 NSP-PIISPVSTNLYQEPPAVSTTSKVLRSH*RPVSSNTSLTAACTIVSPFSILPAGKYH 428
+SP P S T PP ++T+ V P TS ++ T P S G
Sbjct: 275 SSPLPTTSTSCTTSTSIPPTGNSTTPVT-----PTVPPTSTSSTSTPPPPASTSSTGTSS 329
Query: 427 FPAQLSFASCIISTSLNSFIITQATT*VTLPPST 326
P + SC STS+ + T+PP++
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 363
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.0 bits (52), Expect = 9.6
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = +3
Query: 255 TIADQNSVAESQGITPTTPSNFKPVLGGNVTYVVACVIINEFNEVLMMQEAKESCA---- 422
T + +SVA G PT+ S + L +VT + + N V ++ +++
Sbjct: 62 TPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSL 121
Query: 423 GKWYLPAGRMEKGE 464
G Y+ ME GE
Sbjct: 122 GYAYVNFHNMEDGE 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,326
Number of Sequences: 5004
Number of extensions: 49003
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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