Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31472
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 32 0.066
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.15
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 29 0.81
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.9
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 3.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 3.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 3.3
SPCC1840.11 |csl4|SPCC965.01|exosome subunit Csl4|Schizosaccharo... 26 4.3
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.3
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.3
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 26 5.7
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 5.7
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 25 7.6
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 32.3 bits (70), Expect = 0.066
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -1
Query: 256 IPIAVSD--EIVDGILDDASTRLFLEQQNQRNSRVVIGSGDSIDEPRFRSGRSGQNVNV 86
IP+A++D E+V+ DD + ++ + N R+ G+S +EPR R SG+ VNV
Sbjct: 238 IPLAMNDLFEMVENNSDDDTFQIRISYLEIYNERIRDLIGNSDEEPRIRENASGE-VNV 295
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.15
Identities = 26/98 (26%), Positives = 46/98 (46%)
Frame = +3
Query: 186 SRNNRVEASSRIPSTISSETAIGMF*SSPTNCGSGRVRKSSNTTSLFSLDRCYPRATSRS 365
S ++ +SS S SS + I SSP++ SS ++S FS +S S
Sbjct: 322 SSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFS-----STVSSSS 376
Query: 366 STRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGS 479
ST + L S+S ++ SH++ ++ + +S+ S
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS 414
Score = 26.6 bits (56), Expect = 3.3
Identities = 28/117 (23%), Positives = 53/117 (45%)
Frame = +3
Query: 129 SSMLSPLPITTRLFL*FCCSRNNRVEASSRIPSTISSETAIGMF*SSPTNCGSGRVRKSS 308
SS+ S P+T+ F S ++ +S S+ SS T ++PT+ S + SS
Sbjct: 162 SSLSSSDPLTSSTF----SSLSSSTSSSQPSVSSTSSSTFSS---AAPTSTSSSYLSSSS 214
Query: 309 NTTSLFSLDRCYPRATSRSSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGS 479
+S S + SS + +PS S + ++ S ++ +T ++ +S+ S
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSS 271
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 28.7 bits (61), Expect = 0.81
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 452 KSSENVSWKLIPLWENNRVYFKIYSVRR--HQYLKLGTGTDGENDHSVYGD 598
K ++ +K IPL++NN KI +V R + + +GT +G N S D
Sbjct: 249 KECVDIFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNGANSSSTRQD 299
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.1
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Frame = +3
Query: 186 SRNNRVEASSRIPSTISSETAIGMF*SSPTNCGSGRVRKSSNTTSLFSLDRC-YPRATSR 362
S + + SS +PS+ S T + S+ S S N+T+ S +S
Sbjct: 271 SSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSA 330
Query: 363 SSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGS 479
+ST T S + T S ++ P T T+A S
Sbjct: 331 NSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATS 369
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.9
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 228 TISSETAIGMF*SSPTNCGSGRVRKSSNTTSLF-SLDRCYPRATSRSSTRETILPSNSVL 404
TISS T + + TNC +++T+ L+ S P +TS SST+ + + +
Sbjct: 574 TISSSTPVTSTPVTTTNC-------TTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPIT 626
Query: 405 RQTQITTESHTAMPTTRAARTS 470
+ S T++P T RTS
Sbjct: 627 GTSTSKVTSSTSIPLTSTNRTS 648
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 102 PLRPERKRGSSMLSPLPI 155
PL+P+R RG L PLP+
Sbjct: 144 PLKPKRGRGRPRLHPLPV 161
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 219 IPSTISSETAIGMF*SSPTN----CGSGRVRKSSNTTSLFSLDRCYPRATSRSSTRETIL 386
+P+T+S+ ++ F SSP+ G+ + SSN + + Y + ++T T
Sbjct: 518 VPTTVSTSGSVSSFSSSPSPTSSFSGTSALSSSSNEETTTTTQVTYTTSPEETTTTMTTT 577
Query: 387 PSNSVLRQTQITTESHTA 440
+S +T I+T S T+
Sbjct: 578 TCSSRPEET-ISTVSTTS 594
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 338 VLSESNVKIINKRDNLAIKLGAAADSDNDRIAYGDANDKSSENV 469
+LS++ +I+N + +K G A+D D++ GD +SSE++
Sbjct: 755 ILSDAQFRILNNLASTMLKDGKASDDDDN----GDWRPESSESL 794
>SPCC1840.11 |csl4|SPCC965.01|exosome subunit
Csl4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 181
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -1
Query: 625 LVSVRVSAI----ISINAMVVFTIRTRSKFQVLVPTNTVDLEVNPVVLPERNQLPADVLA 458
+V RVS I ++N VV + T+ +FQ ++ + V + + P D++
Sbjct: 60 IVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSFRPGDIVR 119
Query: 457 ALVVGI 440
ALV+ +
Sbjct: 120 ALVISL 125
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 4.3
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +3
Query: 216 RIPSTISSETAIGMF*SSPTNCGSGRVRKSSNTTSLFSLDRCYPRATSRSSTRETILPS- 392
R ST SS ++ + S + + SS +TS S A+ S++ E I S
Sbjct: 50 RRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSS-GTSVITASDVSASNEIISSST 108
Query: 393 -NSVLRQTQITTESHTAMPTT 452
NS+ +Q + TE T PTT
Sbjct: 109 NNSIHQQVSVVTEYVTIQPTT 129
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 207 ASSRIPSTISSETAIGMF*SSPTNCGSGRVRKSSNTTSLFSLDRCYPRATSR--SSTRET 380
+SS PST SS ++ SS ++ S KSS+ +S + R TS SS R T
Sbjct: 136 SSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSH---RTTSHKSSSYRPT 192
Query: 381 ILPSNSV 401
+ P ++
Sbjct: 193 VFPYTTI 199
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 173 LILLLEKQSSGSIIEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVK 310
+IL LEK + +++ VNN I +R++ A +I +G+ IVK
Sbjct: 45 VILALEKVVTSKLLKPRVNNRIGSVDRHI-GIATTGFIPDGQHIVK 89
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 342 YPRATSRSSTRETILPSNSVLRQTQIT-TESHTAMPTTRAARTSAGS 479
YP + +R+ T E ++P+ + +T+I+ +E +T+ T A T++G+
Sbjct: 355 YPASGTRTGTVEVVIPTAGTVTETEISGSELYTS--TFPANGTTSGT 399
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 182 LLEKQSSGSIIEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVK 310
+++ Q S +++D NL N+LE+ LW G I K
Sbjct: 438 VIQYQISRLVLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,626
Number of Sequences: 5004
Number of extensions: 53252
Number of successful extensions: 186
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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