Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31472
         (676 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 pr...    35   0.23 
AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 pr...    35   0.23 
BC085017-1|AAH85017.1|  561|Homo sapiens LAMA5 protein protein.        34   0.53 
AL354836-6|CAI12295.1|  500|Homo sapiens laminin, alpha 5 protein.     32   2.1  

>AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17
           protein.
          Length = 4262

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
 Frame = +3

Query: 126 GSSMLSPLPITTRLFL*FCCSRNNRVEASSRIPSTISSETAIGMF*SSPTNCGSGRVRKS 305
           GS+ L+ +P++TRL +    S  +   A S    T SSE +     +  T+  +    + 
Sbjct: 568 GSTPLTNMPVSTRLVVSSEASTTSTTPADSNTFVTTSSEASSSSTTAEGTSMPTSTYSER 627

Query: 306 SNTTSLFSLDRCYPRATSRSSTRETILPSNS-VLRQTQITTESHTAMPTTRAART 467
             T +  S+      ++  S+   T + SN+ V   T+ T+ S TA  T+    T
Sbjct: 628 GTTITSMSVSTTLVASSEASTLSTTPVDSNTPVTTSTEATSSSTTAEGTSMPTST 682


>AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17
           protein.
          Length = 4493

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
 Frame = +3

Query: 126 GSSMLSPLPITTRLFL*FCCSRNNRVEASSRIPSTISSETAIGMF*SSPTNCGSGRVRKS 305
           GS+ L+ +P++TRL +    S  +   A S    T SSE +     +  T+  +    + 
Sbjct: 568 GSTPLTNMPVSTRLVVSSEASTTSTTPADSNTFVTTSSEASSSSTTAEGTSMPTSTYSER 627

Query: 306 SNTTSLFSLDRCYPRATSRSSTRETILPSNS-VLRQTQITTESHTAMPTTRAART 467
             T +  S+      ++  S+   T + SN+ V   T+ T+ S TA  T+    T
Sbjct: 628 GTTITSMSVSTTLVASSEASTLSTTPVDSNTPVTTSTEATSSSTTAEGTSMPTST 682


>BC085017-1|AAH85017.1|  561|Homo sapiens LAMA5 protein protein.
          Length = 561

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 339 CYPRATSRSSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSA 473
           CYP  +S + TRE +LP+  ++    +     +A+  +R   TSA
Sbjct: 471 CYPTPSSSNDTREQVLPAGQIVSGVSLCRPGWSAVARSRLTSTSA 515


>AL354836-6|CAI12295.1|  500|Homo sapiens laminin, alpha 5 protein.
          Length = 500

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 339 CYPRATSRSSTRETILPSNSVLRQTQIT 422
           CYP  +S + TRE +LP+  ++  T+I+
Sbjct: 471 CYPTPSSSNDTREQVLPAGQIVTNTKIS 498


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,195,870
Number of Sequences: 237096
Number of extensions: 1899835
Number of successful extensions: 4730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4730
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)