Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31469
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.16 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.88 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.7  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 22/87 (25%), Positives = 40/87 (45%)
 Frame = +3

Query: 15  PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 194
           P  +KLLV+    +  +           + ++ E+++ ++IL G YD+ +R S E  + G
Sbjct: 3   PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57

Query: 195 KGSIIQNVVNNLIIDKRRNTMEYCYKL 275
              +  N+    I      TMEY  +L
Sbjct: 58  PAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 21/87 (24%), Positives = 39/87 (44%)
 Frame = +3

Query: 15  PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 194
           P  +KLLV+    +  +           + ++ E+++ ++IL G YD+ +R S E  + G
Sbjct: 3   PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57

Query: 195 KGSIIQNVVNNLIIDKRRNTMEYCYKL 275
              +  N+    I       MEY  +L
Sbjct: 58  PAIVRVNLFVRSIATISDIKMEYSVQL 84


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 91  ADSSTTPALAASMHIANTTRSFILLGAFQI 2
           A+   +  +A  +HI+N T SF L G F++
Sbjct: 396 ANKMESSGMAGRVHISNATLSF-LNGEFEV 424


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 489 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 584
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 489 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 584
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 489 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 584
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 489 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 584
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 489 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 584
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 489 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 584
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 489 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 584
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 486 WENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 584
           +  +R Y K+HN K     + +    N  SR+R
Sbjct: 12  YRKDRRYEKLHNEKEKLLEERTNRKRNSRSRER 44


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 486 WENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 584
           +  +R Y K+HN K     + +    N  SR+R
Sbjct: 12  YRKDRRYEKLHNEKEKLLEERTNRKRNSRSRER 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,684
Number of Sequences: 438
Number of extensions: 3940
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)