Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31467
(732 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 27 0.16
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 26 0.27
U77974-1|AAB36556.1| 276|Tribolium castaneum transcription fact... 25 0.48
AY074761-1|AAL71874.1| 314|Tribolium castaneum ultrabithorax pr... 24 1.1
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 24 1.1
AJ850294-1|CAH64514.1| 539|Tribolium castaneum putative esteras... 23 3.4
AJ850292-1|CAH64512.1| 539|Tribolium castaneum putative esteras... 23 3.4
AJ850293-1|CAH64513.1| 539|Tribolium castaneum putative esteras... 22 4.4
S73225-1|AAB30811.1| 327|Tribolium castaneum protein ( Triboliu... 21 7.8
DQ414248-1|ABD63010.2| 311|Tribolium castaneum sloppy-paired pr... 21 7.8
AJ518940-1|CAD57734.1| 361|Tribolium castaneum extradenticle pr... 21 7.8
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 27.1 bits (57), Expect = 0.16
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +2
Query: 299 LRGSGTPLAP----RSPIPNASATPFRTPSPLPPSWRGPES 409
L G+ TPL + +P F T LPP W+G ES
Sbjct: 189 LNGAHTPLTDDHDEKYGVPTLEELGFDTEGRLPPVWQGGES 229
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 26.2 bits (55), Expect = 0.27
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 104 EPRNFGQRKVTPGTPAGRDLVRGDIIAKIDDYDARD 211
EP G V+ TP LVRG ++AK DARD
Sbjct: 493 EPLYSGNLAVSVATPNDTSLVRGRLVAK-PVADARD 527
>U77974-1|AAB36556.1| 276|Tribolium castaneum transcription factor
homolog protein.
Length = 276
Score = 25.4 bits (53), Expect = 0.48
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Frame = +2
Query: 407 SLPRSTPVPPSQFQPQLDGEYRTYLLSP-SSTRTDETIDESIQSQPYRTTPLVLPGAKVR 583
+LP ST Q + D R + P ++ TD SI + PL P
Sbjct: 109 NLPESTIKVWFQNRRMKDKRQRMAIAWPYAAVYTDPAFAASIFHAAATSLPLHYPPPP-- 166
Query: 584 REPGPTESYLRHHPNPAMRAPP 649
P T Y R+HP P PP
Sbjct: 167 --PVYTHHYARYHPYPNFGVPP 186
>AY074761-1|AAL71874.1| 314|Tribolium castaneum ultrabithorax
protein.
Length = 314
Score = 24.2 bits (50), Expect = 1.1
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 336 PYPTQAPHHSGLQARCLRHGVVRNLCLAAHRCHLRNS----SHNWTANTEPICCR 488
PY + HH LQAR + AA C L +S + N+++N++P C +
Sbjct: 47 PYASSQHHHHHLQARPPQDSPYDASVAAA--CKLYSSEGQQNSNYSSNSKPDCSK 99
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
protein protein.
Length = 1156
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +2
Query: 350 SATPFRTPSPLPPSWRGPESLPRSTPVPPS 439
S TP SP PP P P P S
Sbjct: 36 SMTPNSAASPAPPEEEAASPTPGDVPTPSS 65
Score = 22.6 bits (46), Expect = 3.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = +2
Query: 305 GSGTPLAPRSPIP----NASATPFRTPSPLPP 388
GS TP + SP P AS TP P+P P
Sbjct: 35 GSMTPNSAASPAPPEEEAASPTPGDVPTPSSP 66
>AJ850294-1|CAH64514.1| 539|Tribolium castaneum putative esterase
protein.
Length = 539
Score = 22.6 bits (46), Expect = 3.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 503 TDETIDESIQSQPYRTTPLVLP 568
TDET+ + ++S+P R L +P
Sbjct: 250 TDETMIKCLKSRPARQIALTVP 271
>AJ850292-1|CAH64512.1| 539|Tribolium castaneum putative esterase
protein.
Length = 539
Score = 22.6 bits (46), Expect = 3.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 503 TDETIDESIQSQPYRTTPLVLP 568
TDET+ + ++S+P R L +P
Sbjct: 250 TDETMIKCLKSRPARQIALTVP 271
>AJ850293-1|CAH64513.1| 539|Tribolium castaneum putative esterase
protein.
Length = 539
Score = 22.2 bits (45), Expect = 4.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 503 TDETIDESIQSQPYRTTPLVLP 568
TDET+ ++S+P R L +P
Sbjct: 250 TDETMIRCLKSRPARQIALTVP 271
>S73225-1|AAB30811.1| 327|Tribolium castaneum protein ( Tribolium
castaneum homeodomainprotein mRNA, complete cds. ).
Length = 327
Score = 21.4 bits (43), Expect = 7.8
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +2
Query: 395 RGPESLPRSTPVPPSQFQPQL--DGEYRT-YLLSPSSTRTDET 514
+GP L +S P ++ QP L Y T Y PSS R+ T
Sbjct: 169 KGPVDLSKSEPEKKTESQPMLWPAWVYCTRYSDRPSSGRSPRT 211
>DQ414248-1|ABD63010.2| 311|Tribolium castaneum sloppy-paired
protein.
Length = 311
Score = 21.4 bits (43), Expect = 7.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 731 LGAFRQPLAAAPTLPPF 681
LGAF QPL P PF
Sbjct: 196 LGAFYQPLQPFPPPYPF 212
>AJ518940-1|CAD57734.1| 361|Tribolium castaneum extradenticle
protein.
Length = 361
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1
Query: 682 KGGRVGAAASG 714
KGG GAAASG
Sbjct: 119 KGGGAGAAASG 129
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,609
Number of Sequences: 336
Number of extensions: 4652
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -