Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31465
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    27   1.3  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           26   4.1  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    25   5.4  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    25   9.4  

>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 244 ALEVRGQYSYVDLDGKVH---ETTYTADENGFHPSGADIPQLPQV 369
           ++E  G Y ++ L+G VH    T  T  +   H S A +  LPQV
Sbjct: 199 SIEGEGAYGHLMLEGGVHRVQRTPATETKGRVHTSTASVIVLPQV 243


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -1

Query: 310 CTSSRGPFHRGRRTSTVREPQEPHFRYRRS 221
           C      +H GR  S V  P  PHF  R S
Sbjct: 81  CPPQFEEYHHGRSHSLVSPPPSPHFLKRIS 110


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 273 VRVLSANLKSLIFGTDVLQYSRFLGCFAIRSFKAKAVTLNADIV 142
           ++++ + LK LI  +  L  SRF    A  +F  K +  N D+V
Sbjct: 227 LQIIKSKLKELIGTSIFLAESRFRKLEANNAFHRKPIIKNRDVV 270


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -1

Query: 346 LLRRDGNHFRQRCTSSRGPFHRGRRTSTVREPQEPHFR---YRRSS 218
           L   DGNHFR   + S  P    R+ S   +  E + +   YRRSS
Sbjct: 60  LNENDGNHFRPASSLSFSPSSLSRKDSGPGDGLEVNKKNNFYRRSS 105


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 483 FYSLPYRVFSVQDPNVADDRQHFVRSL 403
           +YS P  +F  Q P +A+  Q F+R L
Sbjct: 108 WYSKPILIFLHQTPELAEASQKFLRYL 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,525
Number of Sequences: 5004
Number of extensions: 34357
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)