Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31464
         (632 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.2  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 298 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKC 393
           CE CN+  G      +++  H  E  F C +C
Sbjct: 137 CEVCNRSFGYKHVLQNHERTHTGEKPFECQEC 168



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +1

Query: 193 FCCWQCDESLTGQRYVLRDEHPYCIKCYESVFANGCEECNKIIGIDSKDLSYKDKHWHEA 372
           F C  C+ S  G ++VL++         E  F   C+EC+K    D    ++   H  E 
Sbjct: 135 FTCEVCNRSF-GYKHVLQNHER--THTGEKPFE--CQECHKRFTRDHHLKTHMRLHTGER 189

Query: 373 CFLCAKC 393
            + C  C
Sbjct: 190 PYRCEHC 196



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/39 (20%), Positives = 16/39 (41%)
 Frame = +1

Query: 514 TKKMGVQDQGSGTEKCFCCVVCKNPIGTKSFIPREQEIY 630
           T  +  + + S  ++ F C VC    G K  +   +  +
Sbjct: 119 TSSVSPEVKDSSRDRPFTCEVCNRSFGYKHVLQNHERTH 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,463
Number of Sequences: 336
Number of extensions: 2258
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)