Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31461
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    29   5.3  
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    28   9.3  

>02_01_0014 -
           87215-87280,87358-87495,87593-87721,87801-87869,
           87962-88042,88133-88237,88338-88568,88665-90197,
           90660-90752,91477-92887,93184-93305,93479-93718,
           94521-94682,94770-94937,95025-95141,95266-95376,
           95919-96506
          Length = 1787

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 409 ANLPPLRQQMLKKFAGYYR*LNSLDH 332
           ANLP LRQQ L+++  +     S+DH
Sbjct: 743 ANLPKLRQQALRRYKSFISVALSIDH 768


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 549 SWGKIDIPSIKSKLELLPGLGSVKAKLVFV 638
           S GK+++ S+ S L L  G+G+++A  +F+
Sbjct: 768 SSGKLELSSVSSALVLAAGIGTIEALALFL 797


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,533,465
Number of Sequences: 37544
Number of extensions: 196427
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)