Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31461
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   9.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.5  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 221 VYNIICSMYIYVHIMLIFY 165
           VY+ + S YI + +ML FY
Sbjct: 249 VYSALGSFYIPMLVMLFFY 267


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 31  EQERERERDVSTHFRSLFLSNLLKF 105
           E+ER +ER + +   + ++SN+  +
Sbjct: 72  ERERSKERKIISSLSNNYISNISNY 96


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 31  EQERERERDVSTHFRSLFLSNLLKF 105
           E+ER +ER + +   + ++SN+  +
Sbjct: 72  ERERSKERKIISSLSNNYISNISNY 96


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 31  EQERERERDVSTHFRSLFLSNLLKF 105
           E+ER +ER + +   + ++SN+  +
Sbjct: 310 ERERSKERKIISSLSNNYISNISNY 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,430
Number of Sequences: 438
Number of extensions: 3167
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)