Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31460
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   6.2  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    25   8.2  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   8.2  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 139  NDISSNVLYFILMDFS-VLLTCIRLASNPINNYTNNKIQH 23
            N++  + ++F+L DFS VL T      N +N  T+  I++
Sbjct: 1606 NNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVTDEDIEN 1645


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 139 NDISSNVLYFILMDFSVLLTCIRLASNPINNYTNNKIQHIFA-QPY 5
           ND   ++L+ IL D S     I    NP  NYT +    + A +PY
Sbjct: 374 NDTYYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPY 419


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 139 NDISSNVLYFILMDFSVLLTCIRLASNPINNYTNNKIQHIFA-QPY 5
           ND   ++L+ IL D S     I    NP  NYT +    + A +PY
Sbjct: 374 NDTYYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPY 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,527
Number of Sequences: 5004
Number of extensions: 57403
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)