Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31455
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 29 0.57
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 1.7
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 27 2.3
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 3.0
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 26 4.0
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.3
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 7.0
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 7.0
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 7.0
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 25 9.2
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 25 9.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.2
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 29.1 bits (62), Expect = 0.57
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 466 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 576
EEKR+++EE++K + +LQA + K N + KKS
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKS 172
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 230 SGSPSPAIDGLLSCLGAGF 174
S SPSP IDG + +G GF
Sbjct: 80 SSSPSPKIDGTAASIGMGF 98
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 184 PK-QESRPSIAGEGDPEFIKRQDQKRSDLDEQLKEYI 291
PK Q RP I+ + E K D+K++ +E+++E I
Sbjct: 143 PKSQRKRPKISFDSVAELAKESDEKQNAYEEKIEERI 179
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 550 PNFTIQKKSENFGLSNAQLERNKTKEQL 633
P FTI++K +NF ++N ERN ++L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKL 514
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 62 SLGTGSWTGSTATLECGAAA 3
++GTG W GS TL G AA
Sbjct: 96 AIGTGVWVGSKNTLREGGAA 115
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 460 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 636
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 636 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEENAKREAEEKVKRETE 694
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 460 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 636
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 620 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEENAKREAEEKAKREAE 678
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 62 SLGTGSWTGSTATLECGAAA 3
++GTG W GS+ +L G AA
Sbjct: 96 AIGTGVWVGSSKSLYRGGAA 115
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 578 SLFFWMVKLGPVLLASFMAWSIAW 507
SL+FW L P +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 109 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNV 14
CW I G S L+ AL+L PA+ NV
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNV 323
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 229 EFIKRQDQKRSDLDEQLKEY 288
E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 536 PARPDPTSPSKRRAK--TSV*AMPSWSATRPRSS 631
P+RPD TS +K + +S A P +++RP +S
Sbjct: 213 PSRPDSTSTTKSKTSSISSARARPIRASSRPTAS 246
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 9.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = -3
Query: 102 CLLSVARVEVGHSVTRHWFLDRQH 31
C L + + +++ R W L R+H
Sbjct: 80 CCLQILGIATSYTILRSWLLSRKH 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.129 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,334
Number of Sequences: 5004
Number of extensions: 24444
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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