Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31455
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.085
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)                    31   0.60 
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           31   1.0  
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     31   1.0  
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)                     29   4.2  
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   28   5.6  
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 28   7.4  
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           27   9.7  

>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +1

Query: 463 IEEKRQRLEEAEKKRQAMLQAMKDA 537
           +EE+R+RLE  EK+RQA  QAM++A
Sbjct: 319 LEEERKRLENLEKERQAAQQAMQEA 343


>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
          Length = 703

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = +1

Query: 463 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 630
           +EE+R+R EEAEKKR+   +  ++  +    +   KK E   L   QLER K +++
Sbjct: 252 MEEERKRKEEAEKKREEEERKRREEEEAAQKW---KKEEL--LRQQQLEREKEEQE 302


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 466  EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSEN 582
            EE+RQ+ EEA K+R+  L A K++SK+      +++S N
Sbjct: 1344 EERRQKREEARKRREEKL-AKKESSKSSNKRKSKERSGN 1381


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 516  APGHE--RCQQDRTQLHHPKEERKLRFEQ 596
            APGH+  RC QD  +L+  K ERK R EQ
Sbjct: 1105 APGHQPLRCLQDVEELYLSKVERKDRLEQ 1133


>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/59 (25%), Positives = 34/59 (57%)
 Frame = +1

Query: 460 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLE 636
           ++EEK++RL+  E+ + ++ +A K+ASK+  + T + +S N  ++         K  ++
Sbjct: 427 EVEEKKRRLQRYERLQSSLNEAYKEASKSSVDGT-RDESRNEEITQTSCNETSGKTPIK 484


>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 729

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 460 DIEEKRQRLEEAEKKRQAMLQAMKD 534
           D+EEK + LEEA+ + +A+   MKD
Sbjct: 522 DLEEKAKELEEAKSENEAISGKMKD 546


>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 466 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLE 636
           EEKR   EEA K+++++ + +  + K     T +K+ E        ++ N+  ++ E
Sbjct: 459 EEKRTESEEAPKRKKSLKRRLSFSRKNKAKKTEEKQDEEGEAREGTMDDNEVSQKPE 515


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 466 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 630
           EE+R++ EEAE++R+   +  K   +      +QK+ +         +R + ++Q
Sbjct: 636 EERRRQQEEAERQRREQEEVFKQQEQQRQQLELQKRQQEQQRQQELQKRQQEEKQ 690


>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 337

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 397 RGAFLLRHEKPCAWPASL*GV 335
           RGA L R+E PC W A L G+
Sbjct: 69  RGAALQRNEPPCMWIAILNGI 89


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 466 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNA 600
           EE+RQ+ EEA K+R+  L      + T  +   ++K    G S A
Sbjct: 537 EERRQKREEARKRREEKLAKKGPTTSTSSSRKRRRKFNRNGRSAA 581


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.129    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,857,646
Number of Sequences: 59808
Number of extensions: 206709
Number of successful extensions: 849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)