Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31453
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   1.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.7  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   9.2  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 403 NSLHYKDYKRTALANDPASIEMRFANLY 320
           N   Y   K+ A+  +PA +++RF NL+
Sbjct: 169 NGETYLRIKKHAVKFNPAKVKLRFENLF 196


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 244 EITPSASSSLNKVLKAQYTDSVWLRRKDWQS 336
           EIT S+ S +    K  Y  SVW    DW S
Sbjct: 335 EITSSSCSYMAHE-KLSYAFSVWRMEDDWNS 364


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 549 LNCFHRRAVMPSMSKRLHSESLTVPIALSY 460
           ++C +  AV P M+  L+ ESL VP   ++
Sbjct: 121 MDCRNIGAV-PKMATELYEESLFVPYITNF 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,733
Number of Sequences: 438
Number of extensions: 3843
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)