Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31451
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0925 - 12440917-12441560,12441675-12441810                       31   0.63 
01_01_0134 - 1224084-1224269,1224578-1224662,1224763-1225050,122...    31   0.63 
01_01_0017 + 133311-133615,133698-133824,133912-134253                 29   2.5  
06_01_0900 + 6926600-6927202                                           28   4.4  
05_01_0188 - 1357074-1357098,1357811-1357941,1358572-1358667,135...    28   5.9  
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540...    28   5.9  
11_06_0060 - 19695338-19695477,19695641-19695734,19695818-196959...    27   7.7  

>03_02_0925 - 12440917-12441560,12441675-12441810
          Length = 259

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 223 NVFTKGYFVTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTSAPHTRTCT 56
           N++++GY  +       ++ RG+   S   C    CA +HRR   P  A  T T T
Sbjct: 53  NLYSQGYGTSTAALSTALFNRGL---SCGSCYELRCAGDHRRSCLPGGATVTVTAT 105


>01_01_0134 -
           1224084-1224269,1224578-1224662,1224763-1225050,
           1225114-1225334,1225511-1225642,1226218-1226494,
           1226722-1226770,1226993-1227088,1227779-1227911,
           1228241-1228391,1228484-1228674,1229167-1229382
          Length = 674

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 415 GSTWRPKISKRSTTKHKNGLYRFF 344
           GS + PK+ ++STTKH+ G +R F
Sbjct: 338 GSEFSPKLIQKSTTKHRRGWWRQF 361


>01_01_0017 + 133311-133615,133698-133824,133912-134253
          Length = 257

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 145 SASECVGCTCAREHRRDTPPTSAPHTRT 62
           S+S      C +   R+ PP  APHT T
Sbjct: 6   SSSTASAAACCKSRSRNPPPAPAPHTST 33


>06_01_0900 + 6926600-6927202
          Length = 200

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 76  VRRWGACLGGARARTCIRRTRSHSRYILHG 165
           VR W   + G R +T IRR R   R+  HG
Sbjct: 76  VREWSELVAGPRWKTFIRRFRRSPRHHHHG 105


>05_01_0188 -
           1357074-1357098,1357811-1357941,1358572-1358667,
           1358736-1358769,1358867-1358958,1359273-1359332,
           1359376-1359435,1360016-1360525,1360645-1360719,
           1360809-1361015
          Length = 429

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 152 TYSTVINNINKYQQRYKIAFRKNIRSLKCIYFCLAYKKKRIAYLVFYSFSLIINS 316
           T  TV++  N Y   +      N+     I F   +K KR+AYL  Y  + +IN+
Sbjct: 35  TTKTVLDPWNPYFPLWPPEIPPNLGLNGAICFIEDWKMKRMAYLASYRSTCVINA 89


>03_05_0704 -
           26953474-26953643,26953770-26953801,26953915-26954009,
           26954107-26954180,26954283-26954412,26954522-26954585,
           26954660-26954722,26954795-26954937,26955386-26955523,
           26955610-26955731,26955805-26955976,26956559-26956630,
           26956753-26956887,26956987-26957103,26957184-26957316,
           26957455-26957561,26958060-26958077,26958235-26958379,
           26958472-26958671,26960744-26961421
          Length = 935

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/44 (40%), Positives = 19/44 (43%)
 Frame = -3

Query: 548 AGPRRAGHQQVPRQGTRGICSERSQPGAPALAPRPCYGFGTFPP 417
           A P   G      QGT  +  E SQ  APA AP P     T PP
Sbjct: 146 APPAGQGSSLAAAQGTDNVKREPSQVAAPAPAPPP----ATLPP 185


>11_06_0060 -
           19695338-19695477,19695641-19695734,19695818-19695973,
           19696109-19696168,19696384-19696602,19696607-19697036,
           19698428-19698747
          Length = 472

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 494 ICSERSQPGAPALAPRPCYGF 432
           ICS  ++PGA  L PRP Y F
Sbjct: 139 ICSVLARPGANILCPRPGYLF 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,899,523
Number of Sequences: 37544
Number of extensions: 255881
Number of successful extensions: 810
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)