Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31447
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             192   2e-49
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             167   7e-42
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              163   1e-40
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             159   2e-39
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         89   4e-18
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   4e-18
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         87   9e-18
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         79   4e-15
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          74   9e-14
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         59   4e-09
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   3e-08
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.067
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.48 
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  192 bits (468), Expect = 2e-49
 Identities = 93/161 (57%), Positives = 109/161 (67%)
 Frame = +2

Query: 176 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPE 355
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 356 GEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAG 535
           G GYK S FHRVIKNFMIQ             SIYG+ F+DENF LKHYG GWL MANAG
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAG 126

Query: 536 KDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMDVVQKIEMT 658
           K+TNGSQF+ITT+KT WLDG H  FGKVL+GMDVV++IE T
Sbjct: 127 KNTNGSQFYITTIKTSWLDGSHTCFGKVLEGMDVVRRIENT 167


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  167 bits (406), Expect = 7e-42
 Identities = 93/172 (54%), Positives = 111/172 (64%), Gaps = 18/172 (10%)
 Frame = +2

Query: 176 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPK 316
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF              +++  
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67

Query: 317 TTENFFQL-----AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE 481
           T   +F        +  +G GYK S FHRVI++FMIQ            +SIYG++F DE
Sbjct: 68  TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE 127

Query: 482 NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMDV 637
           NFKL+HYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGM+V
Sbjct: 128 NFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  163 bits (396), Expect = 1e-40
 Identities = 79/143 (55%), Positives = 97/143 (67%)
 Frame = +2

Query: 224 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 403
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 404 MIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTP 583
           M Q            +SIYG +FEDENF LKH GAG LSMAN+G +TNGSQFF+TT KT 
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTD 253

Query: 584 WLDGRHVVFGKVLKGMDVVQKIE 652
           WLDG+HVVFG V++G DVV+K+E
Sbjct: 254 WLDGKHVVFGNVIEGFDVVRKME 276


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  159 bits (385), Expect = 2e-39
 Identities = 82/144 (56%), Positives = 92/144 (63%)
 Frame = +2

Query: 221 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 400
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 401 FMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKT 580
           FM Q            +SIYG +F DENF LKH G G LSMANAG  TNGSQFF+ T KT
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKT 118

Query: 581 PWLDGRHVVFGKVLKGMDVVQKIE 652
            WLDG+HVVFG V  GMDVV+KIE
Sbjct: 119 SWLDGKHVVFGSVKDGMDVVKKIE 142


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 42/69 (60%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
 Frame = +2

Query: 452 SIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKG 628
           SI+G  FEDE  + L+H     +SMANAG +TNGSQFFIT V TPWLD +H VFG+V+KG
Sbjct: 8   SIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVKG 67

Query: 629 MDVVQKIEM 655
           MDV Q+I +
Sbjct: 68  MDVAQQISL 76


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 39/44 (88%), Positives = 43/44 (97%)
 Frame = +2

Query: 521 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMDVVQKIE 652
           MANAGKDTNGSQFFITTVKT WLDG+HVVFGKVL+GMDVV+K+E
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLE 44


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = +2

Query: 494 KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMDVVQKIEMT 658
           +H   G LSMAN+G +TNGSQFFITTV TP LDGRHVVFGKVLKGMDVV+++E T
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELEAT 242


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 32/67 (47%), Positives = 48/67 (71%)
 Frame = +2

Query: 452 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGM 631
           S+YG  FEDE+F + H   G + MAN G+ TNGSQF+IT    PW+D ++V FG+V++G+
Sbjct: 51  SVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIEGL 110

Query: 632 DVVQKIE 652
           +V+  +E
Sbjct: 111 NVLDVLE 117


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 33/45 (73%), Positives = 37/45 (82%)
 Frame = +2

Query: 515 LSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMDVVQKI 649
           LSMANAG  TNGSQFF+ T KT WLDG+HVVFG V  GMDVV+K+
Sbjct: 3   LSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 34/67 (50%), Positives = 42/67 (62%)
 Frame = +2

Query: 452 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGM 631
           SIYG  F DE F+ KH     LSMAN G +TNGSQFFI           HVVFG V++G 
Sbjct: 31  SIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGHVIQGE 80

Query: 632 DVVQKIE 652
           ++V++IE
Sbjct: 81  ELVRQIE 87


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 48/133 (36%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
 Frame = +2

Query: 269 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 448
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q            
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQGGGFDADMQQKD 87

Query: 449 RSIYGERFEDENFKLKHYGAGWLSMANAG-KDTNGSQFFITTVKTPWLDGR-----HVVF 610
                +   D      H   G L+MA    +D+  SQFFI      +LD       + VF
Sbjct: 88  TQAPIKNEADNGL---HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVF 144

Query: 611 GKVLKGMDVVQKI 649
           GKV+KGMDVV KI
Sbjct: 145 GKVVKGMDVVDKI 157


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
 Frame = +2

Query: 464 ERFEDENFKL----KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 622
           E  +DE   L     H   G +SMAN G ++NGSQFFI   K P LD ++ +FGK L
Sbjct: 286 EELDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGKYL 342


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +2

Query: 269 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 397
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +2

Query: 275 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 388
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 231 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 130
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,916,087
Number of Sequences: 59808
Number of extensions: 369945
Number of successful extensions: 656
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)