Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31443
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   1.3  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   2.2  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    27   2.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.1  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   5.1  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.7  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   6.7  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.7  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   6.7  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/80 (27%), Positives = 37/80 (46%)
 Frame = +2

Query: 35  TNDLEMATGPKIVHKQFNSPIGLYSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDKPANL 214
           T +   A   +++  Q N     YS   +  T  K  +++ NG + I    PT  KP+ +
Sbjct: 558 TIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMM 617

Query: 215 ANSAVLRMLEEEERNRKGYS 274
           A+ A  R+L  E+  R  Y+
Sbjct: 618 AHKA--RILPGEKTIRMHYA 635


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 143 LKNLDNGSVGIDFNNPTTDKPA-NLANSAVLRMLEEEERNR 262
           +K L+  ++  DFN+P++D  +  +   A+L+M++    NR
Sbjct: 224 IKKLEQCNIIFDFNDPSSDLASKEIKREALLQMIDYVSENR 264


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = +2

Query: 551 LIPVGPGVTASPLSPSQYRVGPASPGIAP-QPYRPQPNRWAPVPGPLFPQNPDR-SRATR 724
           LI  G   T SP         P+SPGI+P    + Q      +    +  NP   SR   
Sbjct: 91  LISSGSSQTGSPSQSLSSNKEPSSPGISPSNDSQSQNTNHTSISANPYVNNPSHTSRNPD 150

Query: 725 SRFPLNLSTH 754
           S   LN ++H
Sbjct: 151 SGSSLNTASH 160


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = +1

Query: 268 IQSEESGVASSTRNERIS*STTAESRVRQQRATLPVCSASLSKATSISTRAPISSSASXX 447
           I S  S  +SS+ +   S S ++ S      ++    S++L+ ++S S+R   SSS S  
Sbjct: 343 ISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSS 402

Query: 448 XXXXXXXXXXXXSVSPVSARVL-*GTSSRAN 537
                       S +PVS+      TSSR++
Sbjct: 403 LSSHKSSSSSKSSSAPVSSAFYHNSTSSRSS 433



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +1

Query: 283 SGVASSTRNERIS*STTAESRVRQQRATLPVCSASLSKATSISTRAPISSSAS 441
           S   SS+ +  ++ S+ + S +    ++    S+SLS ++S ST +  SSS+S
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSS 271


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +2

Query: 566 PGVTASPLSPSQYRVGPASPGIAPQPYRPQPNR--WAPVPGPLFPQNPDRSRATRSR 730
           P V   P     Y+ G   PG  P P +        +P+P  + P   D SRAT +R
Sbjct: 436 PPVGQIPSQYLPYQAGLKVPGNTPIPVKQVGGMPLQSPLPVSMKPSADDHSRATPTR 492


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
 Frame = +2

Query: 116 NIKETLNKHLKNLDNG-SVGIDFNNPTTDKPANLANSAVLRMLEEEERNRKGYSQKKVVW 292
           N   TLN +  ++ +G S      NP+T +P+   NS  LR L+     +  Y       
Sbjct: 355 NSPATLNSYTTSVPSGMSRHPMLMNPSTPEPSLGVNSPSLRPLQSLNNVQNSYRVASTQA 414

Query: 293 PPVPETNGYHNPQQQSPVYDNNAQ 364
           PP      Y +  +   +   + Q
Sbjct: 415 PPPHPLRNYTSDAESISMRSKSTQ 438


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 116 NIKETLNKHLKNLDNGSVGIDFNNPTTDKPANLANSAVLRMLEEEERNRK 265
           +I +TL       D  S   ++NNP+T K   ++ S     ++EE+  +K
Sbjct: 373 SIGDTLQNDFTIYDYDSEDEEYNNPSTQKTEKVSQSKKGAKVKEEKGLKK 422


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = +2

Query: 23  HKR*TNDLEMATGPKIVHKQFNSPIGLYSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDK 202
           H   + D ++ + PKI H++F       +++   +T  ++LK L N       N+ T+  
Sbjct: 60  HSNPSKDNQLISPPKINHREF------LNEEKESDTQTRYLKQLINICNSPSKNHETSLS 113

Query: 203 PANLANSAVLRMLEEEERNRK 265
           P+        R L+ E  N K
Sbjct: 114 PSKSTIDNNERKLDNEIDNYK 134


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 21/83 (25%), Positives = 33/83 (39%)
 Frame = +1

Query: 52  GHRPEDSTQAVQLAHRVVLATEYQGNAQQTPEKPRQRICRNRLQQPDNG*AS*LS*FRRP 231
           GHR   +     L+  V L   Y  +  QT    R  +  +RL +P N   S +S    P
Sbjct: 472 GHRRSSTADNGTLSSNVPLYPAYNSSPVQT----RTSLFSSRLSKPSNPIVSSVSQANAP 527

Query: 232 KNVRRGRA*PQRIQSEESGVASS 300
           KN       P  + +  S ++ +
Sbjct: 528 KNALHSMPSPTSLANLPSNLSDT 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,619
Number of Sequences: 5004
Number of extensions: 56883
Number of successful extensions: 251
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)