Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31443
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_26664| Best HMM Match : I-set (HMM E-Value=7.6e-06) 33 0.19
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_5438| Best HMM Match : MCPsignal (HMM E-Value=9.2) 33 0.25
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 33 0.33
SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_47879| Best HMM Match : ATP-synt_Eps (HMM E-Value=3.8) 32 0.58
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19) 31 0.77
SB_31266| Best HMM Match : PKI (HMM E-Value=1) 31 0.77
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 31 1.0
SB_3701| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 31 1.4
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 30 1.8
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08) 30 1.8
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 30 2.4
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 30 2.4
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_37879| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55) 29 3.1
SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_55743| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.1) 28 7.2
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5) 28 7.2
SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01) 28 7.2
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4) 28 9.5
SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15) 28 9.5
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 28 9.5
SB_51344| Best HMM Match : K_tetra (HMM E-Value=6e-18) 28 9.5
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013) 28 9.5
SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1) 28 9.5
>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1555
Score = 35.5 bits (78), Expect = 0.047
Identities = 25/76 (32%), Positives = 32/76 (42%)
Frame = -2
Query: 713 GCDPGSEGRGGPVRGPSDLAVACRVAVRCPGTPDPHGTARETRATQSLPAQRESAYSGQF 534
GC SE R G +R S C+ RCP PD GT E R ++ +
Sbjct: 256 GCCRCSE-RVGAIRRWSATCRPCQCRGRCPALPD--GTLVENRIGTKFNKAENISFEDER 312
Query: 533 ALDDVPHRTLAETGDT 486
ALDD+ H T + T
Sbjct: 313 ALDDLRHNTKFRSDQT 328
>SB_26664| Best HMM Match : I-set (HMM E-Value=7.6e-06)
Length = 434
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 687 RGP-GTGAQRFGCGL*GCGAMPGDAGPTRYCEGDKGDAVTPGPTG 556
+GP G R G G +PGD GP R +GDKGD PG TG
Sbjct: 173 QGPQGLRGPRGYSGDRGPQGIPGDMGP-RGAKGDKGDRGKPGETG 216
>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1453
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 640 LRCDARGRRTHTVLRGRQGRRSHSRPNGN 554
+ C G+R HT+L G + RRS+ RP+ N
Sbjct: 177 ISCSECGKRNHTLLHGAKPRRSNPRPHTN 205
>SB_5438| Best HMM Match : MCPsignal (HMM E-Value=9.2)
Length = 194
Score = 33.1 bits (72), Expect = 0.25
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Frame = +1
Query: 55 HRPEDSTQAVQLAHRVVLATEYQGNAQQTPEKPRQRICRNRLQQPDNG*AS*LS*FRRPK 234
+R E +QA + ++RV ++ ++ + + + NR++QP S R K
Sbjct: 58 NRVEQPSQATESSNRVKQPSQATESSNRVKQPSQATESSNRVKQPSQATES----SNRVK 113
Query: 235 NVRRGRA*PQRIQSEESGVASSTRNERIS*STTAESRVRQ-QRATLPVCSASL-SKATSI 408
R R++ SS R E+ S +T + +RV Q RAT S+AT
Sbjct: 114 QPSRATESSNRVEQPSRATESSNRVEQPSRATESSNRVEQPSRATESSNRVEQPSRATES 173
Query: 409 STRAPISSSAS 441
S R S A+
Sbjct: 174 SNRVEQPSRAT 184
Score = 31.5 bits (68), Expect = 0.77
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = +1
Query: 34 NERPRDGHRPEDSTQAVQLAHRVVLATEYQGNAQQTPEKPRQRICRNRLQQPDNG*AS*L 213
++ +R + +QA + ++RV ++ ++ + + R NR++QP S
Sbjct: 77 SQATESSNRVKQPSQATESSNRVKQPSQATESSNRVKQPSRATESSNRVEQPSRATES-- 134
Query: 214 S*FRRPKNVRRGRA*PQRIQSEESGVASSTRNERIS*STTAESRVRQ-QRAT 366
R + R R++ SS R E+ S +T + +RV Q RAT
Sbjct: 135 --SNRVEQPSRATESSNRVEQPSRATESSNRVEQPSRATESSNRVEQPSRAT 184
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +2
Query: 593 PSQYRVGPASPGIAPQPYRPQPNRWAPVP 679
P QY P APQPYRP P + P P
Sbjct: 536 PLQYGPAPNKYRPAPQPYRPAPEPYRPAP 564
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 563 GPGVTASPLSPSQYRVGPASPGIAPQPYRPQPNRWAPVPGPLFP 694
G G +P+ + P G AP YRP P + P P P P
Sbjct: 519 GYGGQITPIPNPMMQQQPLQYGPAPNKYRPAPQPYRPAPEPYRP 562
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 590 SPSQYRVGPASPGIAPQPYRPQPNRWAPV 676
+P++YR P AP+PYRP P R A V
Sbjct: 542 APNKYRPAPQPYRPAPEPYRPAPFRPAQV 570
>SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 635 PQPYRPQPNR-W-APVPGPLFPQNPDRSRATRSRFPLNLSTHR 757
P P +P PNR W AP + P+R R+ + R P THR
Sbjct: 122 PPPLKPSPNRRWRAPARSATVGKQPERQRSIQIRQPPAWPTHR 164
>SB_47879| Best HMM Match : ATP-synt_Eps (HMM E-Value=3.8)
Length = 267
Score = 31.9 bits (69), Expect = 0.58
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 640 LRCDARGRRTHTVLRGRQGRRSHSRPNGN 554
+ C G+R HT+L G + RRS+ RP N
Sbjct: 64 ISCSECGKRHHTLLHGAKPRRSNPRPQTN 92
>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
Length = 951
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +2
Query: 605 RVGPASPGIAPQ-PYRPQPNRWAPVPGPL---FPQNPDRSRATR 724
R P +P PQ PY+P PN W P L FP+ + R +R
Sbjct: 604 RFSPYAPNTFPQMPYQPMPNPWMSRPQMLPFSFPRKQRKFRGSR 647
>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
Length = 1507
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 569 GVTASPLSPSQYR-VGPASPGIAPQPYRPQPNRWAPVPG 682
G P SPS R GP SP + QP P R AP PG
Sbjct: 416 GQLKPPSSPSPRRQTGPPSPKPSRQPPPSSPQRIAPTPG 454
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 557 PVGPGVTASPLSPSQYRVGPAS--PGIAPQPYRPQPNRWAPVPGPLFPQNP 703
P P + +PL P + PA P I P P P P++ P P P+ P
Sbjct: 203 PPTPPMPETPLPPGSPHIPPAPLHPHIPPAP--PNPSKAIATPNPPMPETP 251
>SB_3701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 31.1 bits (67), Expect = 1.0
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 2/138 (1%)
Frame = +1
Query: 34 NERPRDGHRPEDSTQAVQLAHRVVLATEYQGNAQQTPEKPRQRICRNRLQQPDNG*AS*L 213
++ +R + +QA + ++RV ++ ++ + + R NR++QP S
Sbjct: 60 SQATESSNRVKQPSQATESSNRVKQPSQATESSNRVKQPSRATESSNRVEQPSRATES-- 117
Query: 214 S*FRRPKNVRRGRA*PQRIQSEESGVASSTRNERIS*STTAESRVRQQRATLPVCS--AS 387
R + R R++ SS R ++ S +T + +RV+Q +
Sbjct: 118 --SNRVEQPSRATESSNRVEQPSQATESSNRVKQPSQATESSNRVKQPSQATESSNRVKQ 175
Query: 388 LSKATSISTRAPISSSAS 441
S+AT S R + S S
Sbjct: 176 PSQATESSNRVKLISRGS 193
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 566 PGVTASPLSPSQYRVGPASPGIAPQPYRPQPNRWAPVPGPLFPQNPDRSRATRSRFP 736
P P SP +Y +P Y P P R+ P+P +P +P R ++ R+P
Sbjct: 294 PSPPRYPPSPPRYPPSLHRYPQSPLRYPPSPIRYPPLPS-RYPPSPPRYPSSHPRYP 349
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 557 PVGPGVTASPLSPSQYRVGPASPGIAPQPYRPQ-PNRWA-PVPGPLFPQNPDRSRATRSR 730
PV P P P + PA + P+ P PN A P P P + P RS +T S+
Sbjct: 769 PVPPPCAPIPPMPCSAPLPPAPAPFSAAPHLPPAPNISAEPPPPPPVARKPSRSNSTSSQ 828
Query: 731 FPLNLST 751
L L +
Sbjct: 829 RSLELQS 835
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 614 PASPGIAPQPYRPQPNRWAPVPGPLFPQNP 703
P P + P+P P P ++APVP P P P
Sbjct: 752 PLPPKVTPKP--PAPPQFAPVPPPCAPIPP 779
>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 563 GPGVTASPLSPSQYRVGPASPGIAPQPYRPQPNRWAPVPG-PLFPQ 697
GPG P P+Q + P S G P+ P P+ PG P PQ
Sbjct: 206 GPGQGQKPQGPNQQQNHPLSTGKPPEQSFPLPSHLKQQPGQPAKPQ 251
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +2
Query: 593 PSQYRVGPASPGIAPQPYRPQPNRWAPVPGPLFPQNPDRSR 715
PSQ R+ PASPGI P Q + G PQ +SR
Sbjct: 145 PSQGRIPPASPGIDNYPSYNQNGSYMAGAGANLPQYGSQSR 185
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 614 PASPGIAPQPYRPQPNRWAPVPGPLFP 694
P+S G P P P P R AP PGP+ P
Sbjct: 386 PSSLGNPPPP--PPPGRGAPPPGPMIP 410
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +2
Query: 584 PLSPSQYRVGPASPGIAPQPYRPQPN-RWAPVPGPLFPQNPD 706
PL P P + P PY P PN + P P P +P P+
Sbjct: 159 PLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPN 200
>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
Length = 293
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/57 (28%), Positives = 20/57 (35%)
Frame = +2
Query: 566 PGVTASPLSPSQYRVGPASPGIAPQPYRPQPNRWAPVPGPLFPQNPDRSRATRSRFP 736
PG P+ V P G P Y PQP P P +P P + +P
Sbjct: 132 PGAAGPPMPHPTASVYPPPGGYPPTSYPPQPYPAQPYPQQGYPPQPPPQAYPQPGYP 188
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +2
Query: 509 FCEGRRQEQTGLSKLI---PVGPGVTASPL--SPSQYRVGPASPGIAPQPYRPQPNRWAP 673
F GR+Q S LI P+ P + +P+ SPS P P + P +P P+ +
Sbjct: 1235 FKYGRQQHIGSPSSLISYKPIKPSPSTTPIKPSPSTTSTTPIKPSPSTNPIKPSPSTTST 1294
Query: 674 VP 679
P
Sbjct: 1295 TP 1296
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Frame = +2
Query: 557 PVGPGVTASPL--SPSQYRVGPASPGIAPQPYRPQPNRWAPVPGP-LFPQNPDRSRATRS 727
P+ P + +P+ SPS P P + P +P P+ P P P P S
Sbjct: 1275 PIKPSPSTNPIKPSPSTTSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIK 1334
Query: 728 RFPLNLST 751
P ST
Sbjct: 1335 PSPSTTST 1342
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 575 TASPLSPSQYRVGPASPGIAPQPYRPQPNRWAPVPGPLFPQNPDRSR 715
+A PL P + P S P P +P P P P P P P S+
Sbjct: 1037 SAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQ 1083
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +2
Query: 560 VGPGVTASPLSPSQYRVGP-ASPGIAPQPYRPQPNRWAPVPGP 685
V PG+ A P +P P A PG+ P P P P P P
Sbjct: 172 VSPGILAPPPAPPGVLAPPPAPPGVLPPPPAPPGALIPPPPAP 214
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 575 TASPLSPSQYRVGPASPGI---APQPYRPQPNRWAPVPGPLFPQNPDRSRATR 724
T+ P SPSQ P P +P P P P+ P P P P +P R A +
Sbjct: 192 TSHPTSPSQITQPPPPPPRPPPSPPPPPPPPSPSPPRPPPPPPPSPPRPLAAK 244
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -1
Query: 690 KRGPGTGAQRFGCGL*GCGAMPGDAGPTRYCEGDKGDAVTPGPTGIS 550
K PG R G G +PG G G+KGDA PG G++
Sbjct: 1105 KGDPGPAGPRGPAGRNGIDGLPGTKGEPGSL-GEKGDAGIPGQRGLT 1150
>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 80 QFNSPIGLYSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDKPAN 211
Q + PI + + + L + L+++ + +D +NP +D PAN
Sbjct: 23 QNSEPITGNAADRLHDYLEEQLRSISGSTKTLDLSNPNSDHPAN 66
>SB_37879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Frame = +2
Query: 161 GSVGIDFNNPTTDKPAN-----LANSAVLRMLEEEERNRKGYSQK-------KVVWPPVP 304
G + + F +P P++ A+S+ L E +N Y+Q K++W P
Sbjct: 238 GFICVIFVSPKISLPSSKDFQVFASSSTLEQYEMNVKNNIRYAQGQGWGLWVKLIWGVKP 297
Query: 305 ETNGYH-NPQQQSPV-YDNN 358
E NG+H NP + Y+NN
Sbjct: 298 EDNGHHLNPDDLGTLTYENN 317
>SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)
Length = 1087
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 545 SKLIPVGPGVTASPLSPSQYRVGPASPGIAPQPYRPQPNRWAPVPG 682
++ P+ P + +P+ PS P P + P +P P+ + PG
Sbjct: 256 TRTTPIKPSPSTTPIKPSPSTT-PIKPSPSTTPIKPSPSTTSTTPG 300
>SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +2
Query: 110 QQNIKETLNKHLKNLDNGSVGIDFNNPTTDKPANLANSAVLRMLEEEERNRKGYSQKKVV 289
Q +I++ + L D G +F + + + +A++R E +ER ++ K+
Sbjct: 54 QPDIRQRRRRDLNETDTGK---NFARNESREETPMTRAAIIRRREGQEREGGKFTVLKIT 110
Query: 290 WPPVPETNGYHNPQQQSPVYD 352
E G P +SP+ D
Sbjct: 111 IKNHNEDTGTAKPSSRSPIED 131
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 575 TASPLSPSQYRVGPASPGIAPQPYRPQPNRWAPVPGPLFPQ 697
T SP+ PS R P +P P+P P+P P PGP P+
Sbjct: 1350 TTSPI-PSTPRPRPPTP---PRPPTPRPRPPTPRPGPPTPR 1386
>SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 174 IPTDPLSRFFRCLLSVSLIFCCE 106
IPTDPLS +R + +L FC E
Sbjct: 396 IPTDPLSANYRSAQTSALFFCAE 418
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -1
Query: 705 SGF*GKRGP-GTGAQRFGCGL*GCGAMPGDAGPT--RYCEGDKGDAVTPGPTG 556
+G GK GP G + G G PG GP + +GDKGD PG G
Sbjct: 46 NGTPGKDGPEGPQGPKGDSGSPGAVGSPGPMGPEGPKGDKGDKGDTGAPGIDG 98
>SB_55743| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.1)
Length = 213
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 636 RNPTGHSQIAGPPYRAPSSLRTRIAA 713
RNPT Q A P R PS+L RI +
Sbjct: 24 RNPTAAEQAAQEPARTPSALAERITS 49
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/53 (37%), Positives = 20/53 (37%)
Frame = +2
Query: 557 PVGPGVTASPLSPSQYRVGPASPGIAPQPYRPQPNRWAPVPGPLFPQNPDRSR 715
P PG A P P P G AP P P P AP P P P P R
Sbjct: 945 PPPPGGNAPPPPPPPGGSAPPPGGGAP-PLPPPPGGSAPPPPPPPPPPPPPMR 996
>SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)
Length = 520
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +3
Query: 300 YPKRTDIIIHNSRVPCTT----TTRNTPRLLSLPIKSNLNINP 416
Y +R D ++H+ +PCTT +NT +S + +L P
Sbjct: 69 YLRREDCVVHSGSLPCTTGEGGAAKNTVHRISTAVYESLGKAP 111
>SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)
Length = 1062
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 636 RNPTGHSQIAGPPYRAPSSLRTRIAA 713
RNPT Q A P R PS+L RI +
Sbjct: 749 RNPTAAEQAAQEPARTPSALAERITS 774
>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1788
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 690 KRGPGTGAQRFGCGL*GCGAMPGDAGPTRYCEGDKGDAVTPGPTG 556
++GPGT G G G G PG G R G D G G
Sbjct: 780 RKGPGTSPDGPGTGRKGPGTSPGGPGTGRKGPGTSPDGPGSGRKG 824
>SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)
Length = 773
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 294 LQYPKRTDIIIHNSRVPCTT----TTRNTPRLLSLPIKSNL 404
L Y +R D ++H R+ CTT +NT +S + +L
Sbjct: 47 LGYQRREDCVVHGGRLSCTTGEGGAAKNTVHRISTAVYESL 87
>SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)
Length = 631
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = -1
Query: 678 GTGAQRFGCGL*G--CGAMPGDAGPTRYCEGDKGDAVTPG 565
G+ R G G G CG AG C+GDKG+ G
Sbjct: 585 GSTDSRIGFGASGTACGQSSSSAGNEARCDGDKGNKSVAG 624
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/48 (43%), Positives = 25/48 (52%)
Frame = -1
Query: 693 GKRGPGTGAQRFGCGL*GCGAMPGDAGPTRYCEGDKGDAVTPGPTGIS 550
G GP +G+ G GL G MPG AGP KGD +PG +G S
Sbjct: 532 GVTGP-SGSPGPG-GLQGAAGMPGPAGP-------KGDRGSPGVSGAS 570
>SB_51344| Best HMM Match : K_tetra (HMM E-Value=6e-18)
Length = 307
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 101 LYSQQNIKETLNKHLKNLDNGSVG 172
L S ++IKE+LNK +K LD S+G
Sbjct: 13 LASAEDIKESLNKEVKELDWRSLG 36
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +2
Query: 572 VTASPLSPSQYRVGPASPGIAPQPYRPQPNRWAPVPGPLFPQNPDRSRATRSRFPLNLST 751
VT +P + + P +P P P P AP P P P P + TR P +T
Sbjct: 884 VTKNPKTTTAPPTTPTTPK-PTTPAPPPPLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTT 942
Query: 752 HRS 760
S
Sbjct: 943 QAS 945
>SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
Length = 808
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 612 VRRPRASHRNPTGHSQIAGPPYRAPSSLRTR 704
VR R + +P G+ + A PP +AP+ R R
Sbjct: 613 VRHARTTPYHPQGNGKDAAPPVQAPAPARRR 643
>SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)
Length = 473
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 312 TDIIIHNSRVPCTTTTRNTPRLLSLPIKSNLNINPSPNIK 431
T +I N + T +TPR S I PSPNIK
Sbjct: 159 TSLIQQNITLITTKAVNDTPRTTSTSAVVGTMITPSPNIK 198
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,684,580
Number of Sequences: 59808
Number of extensions: 502074
Number of successful extensions: 2506
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2462
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -