Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31441
         (584 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8HXJ6 Cluster: Putative uncharacterized protein; n=1; ...    40   0.043
UniRef50_Q22KP6 Cluster: Putative uncharacterized protein; n=1; ...    34   2.8  
UniRef50_Q5LKU8 Cluster: Transcriptional regulator, LysR family;...    33   6.6  

>UniRef50_Q8HXJ6 Cluster: Putative uncharacterized protein; n=1;
           Macaca fascicularis|Rep: Putative uncharacterized
           protein - Macaca fascicularis (Crab eating macaque)
           (Cynomolgus monkey)
          Length = 133

 Score = 39.9 bits (89), Expect = 0.043
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 465 CGGGEIGFISLP--VAWILFLYHFNLKLCCQLIEVGSCNCTF 346
           C  G++  IS+P    W+L   H+   LCC L+++G CNC +
Sbjct: 3   CPSGDLSLISVPWHQCWMLSTRHYFNLLCCCLLKLGVCNCLY 44


>UniRef50_Q22KP6 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 686

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -3

Query: 444 FISLPVAWILFLYHFNLKLCCQLIEVGSCNCTFY--YKTALIVK 319
           F+S+P +++L  Y F LKL C++I++ +C  + Y  YK   + K
Sbjct: 467 FLSVPFSYLLVKYLFQLKLKCKVIDIKNCPESKYQQYKKNTLTK 510


>UniRef50_Q5LKU8 Cluster: Transcriptional regulator, LysR family;
           n=4; Rhodobacteraceae|Rep: Transcriptional regulator,
           LysR family - Silicibacter pomeroyi
          Length = 294

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 411 LYHFNLKLCCQLIEVGSCNCTFYYK 337
           +Y  NL+ CCQL+  G+C+   YY+
Sbjct: 124 VYSDNLRTCCQLLSDGTCDFLLYYR 148


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 490,150,280
Number of Sequences: 1657284
Number of extensions: 8792472
Number of successful extensions: 16275
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16270
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)