Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31441
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    28   0.87 
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   6.2  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   8.1  

>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 333 RFYSKMYNYMTLPRSVDSKASN*NDIKKESTRRATK--*NQSLHPHTTILK 479
           RF+SK++ + T P  + S AS+       STR  +      SLHP  T L+
Sbjct: 321 RFHSKIHTHSTPPSQMYSAASHFRYRSDPSTRHVSNSTNKSSLHPSPTSLR 371


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 454 RDWFYFVARRVDSFFISFQF 395
           R+W++F+  R  SFF  F F
Sbjct: 58  RNWWFFIKMRYLSFFFEFFF 77


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 174 CNIKKDFYTLVFVWNSLT*ACRYRATDKYFVTNLFRNTLDISD 46
           CN+ K+  T +F W  L  AC      K +  N F N+L ISD
Sbjct: 790 CNVLKEDITSIFSWEILGDACLSFCQLKNY-HNRFPNSL-ISD 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,188
Number of Sequences: 5004
Number of extensions: 40352
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)