Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31441
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    28   4.2  
X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein ( Caeno...    27   9.8  
AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin c-t...    27   9.8  

>U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical
           protein R173.2 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 499 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 377
           P +KH   S++VWG +        RR+ S    FQ+E +L T
Sbjct: 158 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 199


>U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical
           protein F18C5.7 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 499 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 377
           P +KH   S++VWG +        RR+ S    FQ+E +L T
Sbjct: 187 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 228


>AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.9 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 499 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 377
           P +KH   S++VWG +        RR+ S    FQ+E +L T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 158


>AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.1 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 499 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 377
           P +KH   S++VWG +        RR+ S    FQ+E +L T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 158


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 412 KKNPRDGQRNKTNLSTPTPQY*SSNVSSQ 498
           +K PR G++ +   ST  PQ  S ++SSQ
Sbjct: 214 QKKPRGGKKKEAEASTSVPQASSPDISSQ 242


>X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein (
           Caenorhabditis eleganstransposable element Tc1. ).
          Length = 273

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 499 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 377
           P +KH   S++VWG +        RR+ S    FQ+E +  T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENIFET 158


>AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical
           protein Y39F10A.4 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 499 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 377
           P +KH   S++VWG +        RR+ S    FQ+E +  T
Sbjct: 187 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENIFET 228


>AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical
           protein T07D3.8 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 499 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 377
           P +KH   S++VWG +        RR+ S    FQ+E +  T
Sbjct: 187 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENIFET 228


>AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 2 protein.
          Length = 249

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +3

Query: 240 LNLFSYRKKYICIYI 284
           LNLFS++++YIC+ I
Sbjct: 224 LNLFSFKQRYICLVI 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,912
Number of Sequences: 27780
Number of extensions: 219312
Number of successful extensions: 430
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)