Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31441
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    29   3.0  
At4g14840.1 68417.m02281 expressed protein                             27   7.0  

>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
            family protein similar to CPY (GI:3096961) {Chironomus
            thummi}; contains Pfam PF00400: WD domain, G-beta repeat
            (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -3

Query: 489  NIRTSVLWCGGGEIGFISLPVAWILFLYHFNLKLCCQLIEVGSCNCTFYYKTALIV 322
            N+RTS+  C G  +  +   +A +L L  + L+L    + +G  +C F     L++
Sbjct: 1701 NLRTSIRLCLGSSVEDLKTKLAVVLDLVEYCLRLAMAWV-LGDVHCLFRMVQPLVI 1755


>At4g14840.1 68417.m02281 expressed protein
          Length = 555

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 412 KKNPRDGQRNKTNLSTPTPQY*SSNVSSQAMMIKRTIQTVMDIT 543
           K  PR   R KT  +TP  ++ S+  SS     ++    V D+T
Sbjct: 216 KATPRASNRKKTATTTPAAEHKSARESSSKRYTRQQQGDVFDLT 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,609,250
Number of Sequences: 28952
Number of extensions: 195408
Number of successful extensions: 359
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)