Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31439
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    44   1e-05
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    25   2.8  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    25   2.8  
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         25   2.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   3.7  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   4.9  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    24   6.5  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   6.5  
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |...    24   8.6  

>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +1

Query: 58  NPNEDTEWNDTLRKMGIIPQKEAEFSE 138
           NP+EDTEWND LR  GI+P+KE +  +
Sbjct: 2   NPDEDTEWNDILRSKGILPEKEPDVDD 28


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 296 MKKVPEKARFGEVARRPLAKIM 361
           + K P +ARF EVA+R L K++
Sbjct: 91  ISKDPYRARFDEVAQRNLRKLL 112


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 87  YPSKDGYYT--AERSGVFGGRYCEHDRGHNTGKG 182
           +P+   Y+     R   FGG++  H RG   G+G
Sbjct: 180 HPNVGDYFDWYPHRPNHFGGKFDGHSRGRGAGRG 213


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1

Query: 106 IIPQKEAEFSEADIV 150
           IIP+K+A+FSE D+V
Sbjct: 100 IIPRKKADFSENDLV 114


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 133 KTPLLSAV*YPSFEGYRSILYLHWGSAFY 47
           KTPLL     P F  YR +  + W S FY
Sbjct: 296 KTPLLDL---PPFMRYRHLSDVEWKSCFY 321


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 172 VLCPLSCSQYRPPK 131
           V+ P+S S YRPPK
Sbjct: 298 VITPVSISDYRPPK 311


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 54  AEPQ*RYRMERYPSKDGYYTAERSG 128
           AE +  + M+  P +DG+ T  RSG
Sbjct: 165 AEKRRLFAMKNQPDEDGFVTVVRSG 189


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 70  DTEWNDTLRKMGIIPQKEAEFSEADIVNMIEDTIQEKEAEKQ 195
           + EWND   ++GII   E    E +I    +  + EK+ E +
Sbjct: 91  EEEWNDFQNEIGII---EENAVEQEITLQQQQLLAEKDEENE 129


>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 193 VFQLPFPVLCPLSCSQYRPPK 131
           +FQLP+P+  P++ +  RP K
Sbjct: 32  LFQLPYPLQKPVAPNGMRPAK 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,296,874
Number of Sequences: 5004
Number of extensions: 21397
Number of successful extensions: 73
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)