Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31439
(370 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0068 + 6536756-6537253 28 2.6
11_02_0007 + 7283080-7283918,7284526-7285764,7286317-7286376,728... 27 3.5
04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564... 27 3.5
03_05_1105 + 30438140-30438350,30438448-30438926 27 3.5
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 27 4.6
12_01_0499 - 3959843-3960058,3960158-3960235,3960315-3960389,396... 27 6.1
09_01_0069 - 1010888-1011226,1011412-1011600 26 8.1
07_03_1636 + 28290642-28291574 26 8.1
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412... 26 8.1
>02_02_0068 + 6536756-6537253
Length = 165
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 29 ILIVNLIKCRTPMKIQNGTIPFERWVLYRRKKRSFRRP 142
++ ++C P + +G++ WV RR + RRP
Sbjct: 56 VMDARCVRCGDPARCDSGSVVARSWVFRRRARCCRRRP 93
>11_02_0007 +
7283080-7283918,7284526-7285764,7286317-7286376,
7287469-7287610
Length = 759
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 61 PNEDTEWNDTLRKMGIIPQKEAEFSEAD 144
P + EW L MG +P+K++E D
Sbjct: 389 PRREEEWERVLNYMGSMPKKDSELEVMD 416
>04_04_1096 +
30855192-30855225,30856135-30856208,30856293-30856467,
30856842-30856918,30857042-30857279,30857414-30857478,
30857628-30858086,30858253-30858465,30858613-30859002
Length = 574
Score = 27.5 bits (58), Expect = 3.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 178 FPVLCPLSCSQYRPPKTP 125
+P+ CPLS Y+PP +P
Sbjct: 139 YPLHCPLSSPYYQPPASP 156
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 205 IIVFVFQLPFPVLCPLSCSQYRPPKTPLLSAV 110
+ +F+ LPF VLCPL R P LL A+
Sbjct: 60 LYIFLIILPFIVLCPLYYYYQRHPVNLLLLAL 91
>05_06_0219 +
26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 191 FSASFSCIVSSIMFTISASENSASFCGIIPIFRRVSFHSVSSLGFCI 51
+S F +VS + +I ENS G++ I+ SF + S CI
Sbjct: 405 YSRLFDWLVSRLNASIGQDENSQYLIGVLDIYGFESFKTNSFEQLCI 451
>12_01_0499 -
3959843-3960058,3960158-3960235,3960315-3960389,
3960590-3960676,3960764-3960831,3961854-3961941,
3962041-3962141,3962223-3962343,3962647-3962778,
3962880-3962969
Length = 351
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 369 LLHIILARGLLATSPNLAFSGTFFISPNRFLR 274
++H IL RGL A SP + G +SP R
Sbjct: 3 VVHRILRRGLSAASPLPSLRGLLLVSPQELGR 34
>09_01_0069 - 1010888-1011226,1011412-1011600
Length = 175
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -1
Query: 193 VFQLPFPVLCPLSCSQYRPPKTPLLS 116
+F LP + CP C PP P S
Sbjct: 105 IFNLPKIIPCPYVCQSKSPPSNPAKS 130
>07_03_1636 + 28290642-28291574
Length = 310
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 256 PHLLNLQVRPIHQGLTQIIVFVFQLPFPVLCPLSCSQYRPPKTP 125
P + QVR +H+ T+ ++ + PV+ P S Y P P
Sbjct: 111 PQFASYQVRKLHRSETRGVLHLSYRLGPVVAPQSVFAYPAPPPP 154
>07_01_0554 -
4121692-4121895,4121991-4122148,4123241-4123354,
4123824-4124082
Length = 244
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 223 HQGLTQIIVFVFQLPFPVLCPLSCSQYRPPKTPLL 119
H GL + +F+ LPF VLCPL + P +L
Sbjct: 71 HAGLG-LYIFLIILPFIVLCPLYYYHQKHPVNLIL 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,192,846
Number of Sequences: 37544
Number of extensions: 131424
Number of successful extensions: 391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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