Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31439
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44820| Best HMM Match : 7tm_1 (HMM E-Value=9e-15)                   65   2e-11
SB_26700| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)              26   8.3  
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_9110| Best HMM Match : DUF321 (HMM E-Value=4.5)                     26   8.3  

>SB_44820| Best HMM Match : 7tm_1 (HMM E-Value=9e-15)
          Length = 456

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 31/47 (65%), Positives = 37/47 (78%), Gaps = 2/47 (4%)
 Frame = +1

Query: 55  QNPNEDTEWNDTLRKMGIIPQ--KEAEFSEADIVNMIEDTIQEKEAE 189
           QNPNEDTEWND LR+ GIIP+  KEAE SE  IV+M+E TI++K  E
Sbjct: 2   QNPNEDTEWNDALRRHGIIPEKPKEAEISEDQIVDMLEKTIKQKCTE 48


>SB_26700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 202 IVFVFQLPFPVL-CPLSCSQYR 140
           IV+V+    PVL CP+ C QY+
Sbjct: 60  IVYVYTETHPVLVCPIDCEQYK 81


>SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 61  PNEDTEWNDT-LRKMGIIPQKEAEFSEADIVNMIEDTIQEK 180
           PNE T+   T LRK      K+ EF  AD+ N I DT+ EK
Sbjct: 156 PNETTQQFATRLRKAA----KDCEFG-ADVENQIRDTVLEK 191


>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 91  LRKMGIIPQKEAEFSEADIVNMIEDTIQEKEAEKQK 198
           LRK  ++ QKE+E     +++++ DT  E E E  K
Sbjct: 689 LRKDAVVSQKESENITDLMIDLLGDTSDESEEEYTK 724


>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
          Length = 1120

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 26  RILIVNLIKCRTPMKIQNGTIPFER 100
           R +  +++ CR  ++IQ+GTIP  R
Sbjct: 698 RKVCTSILDCRKALRIQDGTIPDAR 722


>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1408

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -2

Query: 126 RFFLRYNTHLSKGIVPFCIFIGVLHFI--KLTIK 31
           RF  R+ T  SKGIV + I +  L+F   +LT++
Sbjct: 46  RFDFRFRTLFSKGIVNYTISVKPLYFTPSQLTVR 79


>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 88  TLRKMGIIPQKEAEFSEADIVNMIEDTIQEKEAEKQKQ 201
           T R+  I+ Q     S+  I NMI++  +  EA+KQK+
Sbjct: 301 TGREQQIVIQSSGGLSKDAIENMIKEAEKYAEADKQKK 338


>SB_9110| Best HMM Match : DUF321 (HMM E-Value=4.5)
          Length = 199

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 162 LYHVHNIGLRKLRFFLRYNTHLSK 91
           +YH HN  +RK R +  YN+ + K
Sbjct: 176 VYHDHNSRVRKWRVYHNYNSRVRK 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,525,251
Number of Sequences: 59808
Number of extensions: 158198
Number of successful extensions: 476
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)