Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31439
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    27   5.5  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   5.5  
AC024844-5|AAK29953.1|  156|Caenorhabditis elegans Hypothetical ...    27   5.5  
AC006642-9|AAX88828.1|  339|Caenorhabditis elegans Laterally sym...    27   5.5  
AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally sym...    27   5.5  
Z82274-12|CAJ76931.1|  304|Caenorhabditis elegans Hypothetical p...    26   7.3  
Z82274-11|CAB54268.2|  315|Caenorhabditis elegans Hypothetical p...    26   7.3  
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p...    26   7.3  
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical ...    26   7.3  
AF324487-1|AAK49908.1|  315|Caenorhabditis elegans JC8.12-like p...    26   7.3  

>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
           protein 68 protein.
          Length = 5079

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 61  PNEDTEWNDTLRKMGIIPQKEAEFSEADIVNMIEDTIQE 177
           PN++ ++ +    +  +  ++  F E  ++NMI DTI +
Sbjct: 341 PNDEQDFEEKQNHLRALRSRQDLFQEEGVLNMILDTIDK 379


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
           protein.
          Length = 5071

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 61  PNEDTEWNDTLRKMGIIPQKEAEFSEADIVNMIEDTIQE 177
           PN++ ++ +    +  +  ++  F E  ++NMI DTI +
Sbjct: 462 PNDEQDFEEKQNHLRALRSRQDLFQEEGVLNMILDTIDK 500


>AC024844-5|AAK29953.1|  156|Caenorhabditis elegans Hypothetical
           protein Y65B4A.7 protein.
          Length = 156

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 190 FQLPFPVLCPLSCSQ-YRPPKTPLLSAV*YPSFEGYRSILYLHWGSAFY 47
           + +P P    L C+  +R  K+P   A   P+FE   S   +HW  A +
Sbjct: 66  YPMPAPYGNALRCADCHRAAKSPKCHACKLPTFERCVSAFNVHWHMACF 114


>AC006642-9|AAX88828.1|  339|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform b protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 67  EDTEWNDTLRKMGIIPQKEAEFSEADIVNMIEDTI 171
           E   W D LR+  ++PQ E E    D +  +EDTI
Sbjct: 184 EPEHWVDKLRRGDLLPQVELE----DKIRRLEDTI 214


>AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform a protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 67  EDTEWNDTLRKMGIIPQKEAEFSEADIVNMIEDTI 171
           E   W D LR+  ++PQ E E    D +  +EDTI
Sbjct: 210 EPEHWVDKLRRGDLLPQVELE----DKIRRLEDTI 240


>Z82274-12|CAJ76931.1|  304|Caenorhabditis elegans Hypothetical
           protein JC8.12b protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 197 FCFSASFSCIVSSIMFTISASENSASFCGI-IPIFRRV 87
           +CF      ++ SI++TIS     ASF GI +P F  V
Sbjct: 56  YCFEKGRHIVIPSILYTISQWITVASFEGIAMPNFDSV 93


>Z82274-11|CAB54268.2|  315|Caenorhabditis elegans Hypothetical
           protein JC8.12a protein.
          Length = 315

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 197 FCFSASFSCIVSSIMFTISASENSASFCGI-IPIFRRV 87
           +CF      ++ SI++TIS     ASF GI +P F  V
Sbjct: 67  YCFEKGRHIVIPSILYTISQWITVASFEGIAMPNFDSV 104


>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 118 KEAEFSEADIVNMIEDTIQEKEAEKQ 195
           + AE SE+ ++NM+ED + + E + Q
Sbjct: 57  QNAEQSESSLINMLEDRLNQAENQIQ 82


>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 118 KEAEFSEADIVNMIEDTIQEKEAEKQ 195
           + AE SE+ ++NM+ED + + E + Q
Sbjct: 57  QNAEQSESSLINMLEDRLNQAENQIQ 82


>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 118 KEAEFSEADIVNMIEDTIQEKEAEKQ 195
           + AE SE+ ++NM+ED + + E + Q
Sbjct: 57  QNAEQSESSLINMLEDRLNQAENQIQ 82


>AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical
           protein 4R79.1a protein.
          Length = 344

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 173 CIVSSIMFTISASENSASFCGIIPIFRRVSFHSVSSLG 60
           C+VS+++ +  +++   SF G IP   RV+ H   + G
Sbjct: 11  CLVSTVVRSQPSADVFRSFAGYIPEDHRVTHHEWQNSG 48


>AF324487-1|AAK49908.1|  315|Caenorhabditis elegans JC8.12-like
           protein protein.
          Length = 315

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 197 FCFSASFSCIVSSIMFTISASENSASFCGI-IPIFRRV 87
           +CF      ++ SI++TIS     ASF GI +P F  V
Sbjct: 67  YCFEKGRHIVIPSILYTISQWITVASFEGIAMPNFDSV 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,132,029
Number of Sequences: 27780
Number of extensions: 119850
Number of successful extensions: 400
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)