Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31439
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29470.1 68416.m03701 hypothetical protein                          29   1.3  
At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein simil...    29   1.3  
At4g18160.1 68417.m02698 outward rectifying potassium channel, p...    28   2.2  
At2g27690.1 68415.m03355 cytochrome P450, putative similar to Cy...    27   3.9  
At2g04063.1 68415.m00388 glycine-rich protein                          27   3.9  
At5g14240.1 68418.m01664 expressed protein                             27   5.2  
At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR...    27   5.2  
At5g24880.1 68418.m02946 expressed protein ; expression supporte...    26   6.8  
At5g46370.1 68418.m05707 outward rectifying potassium channel, p...    26   9.0  
At4g24680.1 68417.m03533 expressed protein                             26   9.0  
At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family pr...    26   9.0  

>At3g29470.1 68416.m03701 hypothetical protein
          Length = 174

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 63  Q*RYRMERYPSKDGYYTAERSGVFGGRYCEHDRGHNTGKG 182
           Q +YR   +P  +     + SG   GR C H RG   G+G
Sbjct: 70  QTQYRSAPFPEANVTSYDQESGYNRGRGCGHGRGRGRGRG 109


>At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein similar
           to SP|P25358 Elongation of fatty acids protein 2 (GNS1
           protein) (V-SNARE bypass mutant gene 2 protein)
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01151: GNS1/SUR4 family
          Length = 298

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -1

Query: 235 VRPIHQGLTQIIVFVFQLPFPVLCPLSCSQYRPPKTPLLSAV*YPSFEGYRSILYLHWGS 56
           ++PI   +  +I+F+  L   V C LS      PK  L  AV +P     +  L+  W  
Sbjct: 65  LKPI-TAVHSLILFLLSLTMAVGCTLSLISSSDPKARLFDAVCFPLDVKPKGPLFF-WAQ 122

Query: 55  AFY 47
            FY
Sbjct: 123 VFY 125


>At4g18160.1 68417.m02698 outward rectifying potassium channel,
           putative (KCO6) similar to kco1 [Arabidopsis thaliana]
           gi|2230761|emb|CAA69158; member of the 2 pore, 4
           transmembrane (2P/4TM) K+ channel family, PMID:11500563
          Length = 436

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 144 IGLRKLRFFLRYNTHLSKGIVPFCIFIGV--LHFIK 43
           I ++K R  +R    L+ G+V  CI +GV  +HFI+
Sbjct: 261 IDVKKGRMRIRLKVALALGVVVLCIAVGVGIMHFIE 296


>At2g27690.1 68415.m03355 cytochrome P450, putative similar to
           Cytochrome P450 94A1  (P450-dependent fatty acid
           omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
           Pfam profile: PF00067 cytochrome P450; supported by
           cDNA: gi_13877668
          Length = 495

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 143 SASENSASFCGIIPIFRRVSFHSVSSLGF 57
           S S+N  S   +  +FRR SF ++S L F
Sbjct: 159 SFSDNPGSVLDLQDVFRRFSFDTISKLSF 187


>At2g04063.1 68415.m00388 glycine-rich protein 
          Length = 112

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 69  RYRMERYPSKDGYYTAERSGVFGGRYCEHDR-GHNTGKG 182
           +Y+  +     G Y   + G+FGG+  +HD  G   GKG
Sbjct: 66  KYKRGKQSIGGGNYKCGKHGMFGGKRGKHDMFGGKRGKG 104


>At5g14240.1 68418.m01664 expressed protein
          Length = 256

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 73  TEWNDTLRKMGIIPQKEAEF 132
           T+W+D  RK+G +P+K   F
Sbjct: 16  TQWDDIQRKLGNLPEKAPAF 35


>At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1163

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 61  PNEDTEWNDTLRKMGIIPQKEAEFSEADIVNMIEDTIQE 177
           PN+ T W + L ++  +  K+ E  E D  +MIE+ +++
Sbjct: 131 PNKVTTWREALTQIASLAGKDFETCE-DEASMIEEIVKD 168


>At5g24880.1 68418.m02946 expressed protein ; expression supported
           by MPSS
          Length = 443

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 64  NEDTEWNDTLRKMGIIPQKEAEFSEADIVNMIEDTIQEKEAEKQKQ 201
           N+  E  D  +K+      E   +E+  V  +E+T QEKE E +++
Sbjct: 297 NKSEEEEDVKKKIDENETPEKVDTESKEVESVEETTQEKEEEVKEE 342


>At5g46370.1 68418.m05707 outward rectifying potassium channel,
           putative (KCO2) identical to KCO2 protein [Arabidopsis
           thaliana] gi|6686780|emb|CAB64717; similar to kco1
           [Arabidopsis thaliana] gi|2230761|emb|CAA69158; member
           of the 2 pore, 4 transmembrane (2P/4TM) K+ channel
           family, PMID:11500563
          Length = 443

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 144 IGLRKLRFFLRYNTHLSKGIVPFCIFIGVL--HFIK 43
           I ++K R  +R    L+ G+V  C+  GVL  HF++
Sbjct: 261 IDVKKGRMRIRLKVGLALGVVVLCLGFGVLIMHFVE 296


>At4g24680.1 68417.m03533 expressed protein
          Length = 1480

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 84   RYPSKDGYYTAERSGVFGGRYCEHDRGHNT 173
            R P    ++TA R+G +GGR    D+ + +
Sbjct: 1293 RVPGDHVWHTANRTGKYGGRESTRDKPYGS 1322


>At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family
           protein / F-box family protein contains Pfam profiles:
           PF00646 F-box domain, PF00010 helix-loop-helix
           DNA-binding domain
          Length = 828

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 188 SASFSCIVSSIMFTISASENSASFCGIIPIF 96
           S +F+ +  S+   + A ENS+  CG+ P+F
Sbjct: 525 SMNFTGLNHSVPDFLPAPENSSGSCGLSPLF 555


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,739,089
Number of Sequences: 28952
Number of extensions: 109812
Number of successful extensions: 342
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)