Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31437
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 426 e-120
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 238 5e-64
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 231 9e-62
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 136 4e-33
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 109 4e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 85 7e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 1e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 53 3e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 53 3e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.005
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 3.4
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 426 bits (1049), Expect = e-120
Identities = 200/228 (87%), Positives = 215/228 (94%)
Frame = +1
Query: 1 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 180
+NREKMTQI+FETFN+PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPH
Sbjct: 114 SNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH 173
Query: 181 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAS 360
AI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA S
Sbjct: 174 AIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQS 233
Query: 361 TSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDL 540
+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+E+ GIHE YNSIMKCDVDIRKDL
Sbjct: 234 SSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDL 293
Query: 541 YANTVMSGGTTMYPGIADRMQKEITGLAPSTIKIKIIAPPERKYSVWI 684
Y N VMSGGTTMYPGIADRMQKEI LAPS++K+KI+APPERKYSVWI
Sbjct: 294 YGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWI 341
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 238 bits (583), Expect = 5e-64
Identities = 117/239 (48%), Positives = 164/239 (68%), Gaps = 11/239 (4%)
Frame = +1
Query: 1 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 180
ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H
Sbjct: 114 ANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNH 173
Query: 181 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAS 360
+ RLD+AGRD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E + + +
Sbjct: 174 LVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEET 233
Query: 361 TSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDL 540
T L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E ++++I DVDIRK L
Sbjct: 234 TVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYL 293
Query: 541 YANTVMSGGTTMYPGIADRMQKEITGL--------APSTI---KIKIIAPPERKYSVWI 684
Y V+SGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 294 YRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 231 bits (564), Expect = 9e-62
Identities = 102/227 (44%), Positives = 154/227 (67%)
Frame = +1
Query: 4 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 183
N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P A
Sbjct: 120 NKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSA 179
Query: 184 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAST 363
I + ++ GRD+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+ +
Sbjct: 180 IQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHK 239
Query: 364 SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLY 543
+Y+LPD Q IT+G E F PE LF P +G E+ G+H ++ SI+ D+D+R LY
Sbjct: 240 PQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLY 299
Query: 544 ANTVMSGGTTMYPGIADRMQKEITGLAPSTIKIKIIAPPERKYSVWI 684
+N V+SGG+T+ G +R E+ ++ ++KI A PER ++ W+
Sbjct: 300 SNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWL 346
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 136 bits (328), Expect = 4e-33
Identities = 83/226 (36%), Positives = 123/226 (54%), Gaps = 15/226 (6%)
Frame = +1
Query: 4 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIY 159
NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+
Sbjct: 138 NRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVA 197
Query: 160 EGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFE 333
EGY + +I + LAGRD+T ++ +L +R S TAER IKE+ CYV D
Sbjct: 198 EGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIV 252
Query: 334 QEMA--TAAASTSLEKSYELPDGQ--VITIGNERFRCPEALFQPSFLGME-SCGIHETVY 498
+E + L+ + E G I +G ERF PE F P + + E V
Sbjct: 253 KEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVD 312
Query: 499 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITGLAPSTI 636
N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 313 NVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERI 358
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 109 bits (262), Expect = 4e-25
Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 20/204 (9%)
Frame = +1
Query: 112 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 291
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVN 216
Query: 292 DIKEKLCYVALDFEQEMATAAAS--TSLEKSYELPD------------------GQVITI 411
+IKE +CYV+ +F+++M + LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 412 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 591
NERF PE LF PS + + GI E V S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 592 DRMQKEITGLAPSTIKIKIIAPPE 663
R+ E+ LAP+ ++K+ P +
Sbjct: 337 KRLSSELRSLAPANWEVKVFEPSD 360
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 85.4 bits (202), Expect = 7e-18
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Frame = +1
Query: 256 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 435
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 436 EALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 588
E LF PSF S G+HE VY SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 589 ADRMQKEITGLA 624
++R+Q E+ LA
Sbjct: 360 SERLQAEVQRLA 371
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.3 bits (142), Expect = 1e-10
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Frame = +1
Query: 7 REKMTQIMFETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPH 180
R MT+++FE +N+P++ I + S Y + + ++GIVL+ G+ SH +P+ G +
Sbjct: 131 RSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILS 190
Query: 181 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAS 360
R+ G + YL+K+ + SF + C+V+ D+ ++A A
Sbjct: 191 EAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHALDR 250
Query: 361 TSLEK 375
LE+
Sbjct: 251 DILER 255
Score = 55.2 bits (127), Expect = 8e-09
Identities = 23/88 (26%), Positives = 47/88 (53%)
Frame = +1
Query: 418 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 597
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 598 MQKEITGLAPSTIKIKIIAPPERKYSVW 681
+++E+T + P I + W
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAW 681
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 53.2 bits (122), Expect = 3e-08
Identities = 31/100 (31%), Positives = 49/100 (49%)
Frame = +1
Query: 4 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 183
+RE TQ FE P +A + ++ LYA G G+V+D G + PI +G + A
Sbjct: 161 DRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTA 220
Query: 184 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE 303
+L L GR +T +L +L E + ++ + DI E
Sbjct: 221 TQQLPLGGRYMTQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 53.2 bits (122), Expect = 3e-08
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +1
Query: 478 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITGLAPSTIKIKIIAP 657
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 658 ---PERKYSVWI 684
ER Y+ W+
Sbjct: 385 GHVVERSYASWL 396
Score = 51.2 bits (117), Expect = 1e-07
Identities = 26/84 (30%), Positives = 42/84 (50%)
Frame = +1
Query: 4 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 183
NR K + MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 113 NRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKG 172
Query: 184 ILRLDLAGRDLTDYLMKILTERGY 255
+G + D L + L ++ +
Sbjct: 173 YQVQHFSGNAINDILAQTLRDKNF 196
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/84 (20%), Positives = 42/84 (50%)
Frame = +1
Query: 10 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 189
EK+ I+F + + +++ + + +G + V+D G + + EG +P++ +
Sbjct: 260 EKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRI 319
Query: 190 RLDLAGRDLTDYLMKILTERGYSF 261
+++ G D+T MK+L + +
Sbjct: 320 KINYGGDDITLLFMKLLMRSHFPY 343
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 532 KDLYANTVMSGGTTMYPGIADRMQKEITGLAPSTIKIKIIAPP 660
K+LY++ ++ GG +PG A +++ I + I +I PP
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPP 569
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 155 STKVTLCPTPSSVWTW 202
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 483 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 611
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,739
Number of Sequences: 5004
Number of extensions: 46437
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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