Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31437
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56| Best HMM Match : Actin (HMM E-Value=0) 453 e-128
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 452 e-128
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 452 e-127
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 450 e-127
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 440 e-124
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 349 9e-97
SB_54| Best HMM Match : Actin (HMM E-Value=0) 265 3e-71
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 245 3e-65
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 206 1e-53
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 192 2e-49
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 144 6e-35
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 110 9e-25
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 75 7e-14
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 71 9e-13
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 38 0.010
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5) 32 0.38
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 32 0.38
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 1.2
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 30 1.5
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 29 3.5
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 29 4.7
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 8.1
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 28 8.1
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 28 8.1
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 453 bits (1117), Expect = e-128
Identities = 215/228 (94%), Positives = 223/228 (97%)
Frame = +1
Query: 1 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 180
ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPH
Sbjct: 114 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPH 173
Query: 181 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAS 360
AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S
Sbjct: 174 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASS 233
Query: 361 TSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDL 540
+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDL
Sbjct: 234 SSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDL 293
Query: 541 YANTVMSGGTTMYPGIADRMQKEITGLAPSTIKIKIIAPPERKYSVWI 684
YANTV+SGG+TMYPGIADRMQKEIT LAP T+KIKIIAPPERKYSVWI
Sbjct: 294 YANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWI 341
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 452 bits (1115), Expect = e-128
Identities = 214/228 (93%), Positives = 223/228 (97%)
Frame = +1
Query: 1 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 180
ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPH
Sbjct: 115 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPH 174
Query: 181 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAS 360
AI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S
Sbjct: 175 AIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMETAASS 234
Query: 361 TSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDL 540
+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDL
Sbjct: 235 SSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDL 294
Query: 541 YANTVMSGGTTMYPGIADRMQKEITGLAPSTIKIKIIAPPERKYSVWI 684
YANTV+SGG+TMYPGIADRMQKEIT LAP T+KIKIIAPPERKYSVWI
Sbjct: 295 YANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWI 342
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 452 bits (1114), Expect = e-127
Identities = 214/228 (93%), Positives = 223/228 (97%)
Frame = +1
Query: 1 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 180
ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPH
Sbjct: 115 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPH 174
Query: 181 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAS 360
AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S
Sbjct: 175 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMTTAASS 234
Query: 361 TSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDL 540
+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDL
Sbjct: 235 SSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDL 294
Query: 541 YANTVMSGGTTMYPGIADRMQKEITGLAPSTIKIKIIAPPERKYSVWI 684
YANTV+SGG+TMYPGIADRMQKEI+ LAP T+KIKIIAPPERKYSVWI
Sbjct: 295 YANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWI 342
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 450 bits (1108), Expect = e-127
Identities = 214/228 (93%), Positives = 223/228 (97%)
Frame = +1
Query: 1 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 180
ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPH
Sbjct: 114 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPH 173
Query: 181 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAS 360
AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL YVALDFEQEMATAAAS
Sbjct: 174 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAAAS 233
Query: 361 TSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDL 540
+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDL
Sbjct: 234 SSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDL 293
Query: 541 YANTVMSGGTTMYPGIADRMQKEITGLAPSTIKIKIIAPPERKYSVWI 684
YANTV+SGG+TM+PGIADRMQKEI+ LAP T+KIKIIAPPERKYSVWI
Sbjct: 294 YANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWI 341
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 440 bits (1084), Expect = e-124
Identities = 208/227 (91%), Positives = 219/227 (96%)
Frame = +1
Query: 4 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 183
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 184 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAST 363
I+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSS 197
Query: 364 SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLY 543
SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLY
Sbjct: 198 SLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLY 257
Query: 544 ANTVMSGGTTMYPGIADRMQKEITGLAPSTIKIKIIAPPERKYSVWI 684
ANTV+SGGTTMYPGIADRMQKEI+ LAP T+KIKIIAPPERKYSVWI
Sbjct: 258 ANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWI 304
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 349 bits (859), Expect = 9e-97
Identities = 180/228 (78%), Positives = 189/228 (82%)
Frame = +1
Query: 1 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 180
ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DS G + H
Sbjct: 115 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDS------------GDGVSH 162
Query: 181 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAS 360
+ I ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S
Sbjct: 163 TV---------------PIYEERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASS 207
Query: 361 TSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDL 540
+S+EKSYELPDGQVITIGNERFRCPEAL QPSFLGMES GIHET YNSIMKCDVDIRKDL
Sbjct: 208 SSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDL 267
Query: 541 YANTVMSGGTTMYPGIADRMQKEITGLAPSTIKIKIIAPPERKYSVWI 684
YANTVMSGGTTMYPG+ADRMQKEI+ LAPST+KIKIIAPPERKYSVWI
Sbjct: 268 YANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWI 315
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 265 bits (649), Expect = 3e-71
Identities = 118/187 (63%), Positives = 149/187 (79%)
Frame = +1
Query: 4 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 183
NRE+M Q+MFE+FN P MYVA+QAV++LYASGRTTG V D GDGVSHTVP+Y+GY LPHA
Sbjct: 2160 NRERMVQLMFESFNVPCMYVAVQAVMALYASGRTTGTVFDCGDGVSHTVPVYDGYWLPHA 2219
Query: 184 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAST 363
R+DLAGRDLT YL +++TERGYSF +TAE++I+RD+KE LCY A+D+E+E+ A S
Sbjct: 2220 TQRIDLAGRDLTHYLQRLVTERGYSFQSTAEQQIIRDLKETLCYCAMDYERELKEAETSD 2279
Query: 364 SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLY 543
E Y LPDGQ I IG+ERFR E LFQPS LG + GIHE+++ SI KCD+D+R +L+
Sbjct: 2280 DCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDLRAELF 2339
Query: 544 ANTVMSG 564
N V+SG
Sbjct: 2340 HNIVLSG 2346
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 245 bits (599), Expect = 3e-65
Identities = 108/206 (52%), Positives = 148/206 (71%)
Frame = +1
Query: 4 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 183
NREKM ++MFE + +Y+AIQAVL+LYA G TG+V+DSGDGV+H P+YEG+ALPH
Sbjct: 119 NREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHL 178
Query: 184 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAST 363
RLD+AGRD+T YL+K++ RGY+F TA+ E VR +KEKLCYV + EQE A +T
Sbjct: 179 TRRLDIAGRDITKYLIKLMLLRGYAFNHTADFETVRMMKEKLCYVGYNIEQEQKLALETT 238
Query: 364 SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLY 543
L + Y LPDG+V+ + ERF PEALFQP + +E G+ E ++N+I D+D R + Y
Sbjct: 239 VLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFY 298
Query: 544 ANTVMSGGTTMYPGIADRMQKEITGL 621
+ V+SGG+TMYPG+ R+++EI L
Sbjct: 299 KHIVLSGGSTMYPGLPSRLEREIKQL 324
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 206 bits (503), Expect = 1e-53
Identities = 97/106 (91%), Positives = 102/106 (96%)
Frame = +1
Query: 25 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 204
IMFE FNSPA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 205 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 342
GRDLTDYLMK++TERGYSFTTTAEREIVRDIKEKLCYVALDF QE+
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 192 bits (469), Expect = 2e-49
Identities = 86/111 (77%), Positives = 101/111 (90%)
Frame = +1
Query: 352 AASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIR 531
A S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGME+ GIHE +YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 532 KDLYANTVMSGGTTMYPGIADRMQKEITGLAPSTIKIKIIAPPERKYSVWI 684
KDLY+N V+SGG+TM+PGIADRMQKEI LA +++K+K+IAPPERKYSVWI
Sbjct: 65 KDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWI 115
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 144 bits (349), Expect = 6e-35
Identities = 62/101 (61%), Positives = 87/101 (86%)
Frame = +1
Query: 4 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 183
NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGVSH+VPIYEG+A+PH+
Sbjct: 141 NREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGVSHSVPIYEGFAMPHS 200
Query: 184 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 306
I+R D+AGRD++ YL +L + G+ F +++E EIVR IKE+
Sbjct: 201 IMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +1
Query: 481 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPG 585
I E + +I K D+D+R+ LY+N V+SGG+T++ G
Sbjct: 257 IIEVLAFAIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 110 bits (265), Expect = 9e-25
Identities = 57/132 (43%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
Frame = +1
Query: 70 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE- 246
Q LSLYASG T G+ L SG + IYEG+ L H + L++ G LT+ L + L +
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 247 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERF 426
RG++FT+++ +IV DIKEK+CY++ D +E+ + L K Y LPDGQ+I+IG E
Sbjct: 827 RGHNFTSSSGWQIVNDIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECI 886
Query: 427 RCPEALFQPSFL 462
E LF+P L
Sbjct: 887 SSMEPLFRPDLL 898
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 74.5 bits (175), Expect = 7e-14
Identities = 33/80 (41%), Positives = 54/80 (67%)
Frame = +1
Query: 7 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 186
REK+T++MFE +N PA ++ +VL+ +A+GR+ G+V+DSG + VP+++GY L AI
Sbjct: 49 REKLTELMFEKYNVPAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAI 108
Query: 187 LRLDLAGRDLTDYLMKILTE 246
+R LAG +T ++ E
Sbjct: 109 VRSPLAGDFITAQCRQMFEE 128
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/77 (27%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Frame = +1
Query: 463 GMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITGLAPSTIKI 642
G + G+ + V S+ D+DIR L+ + +++GG T+ G +R+ +E+ P ++++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 643 KII---APPERKYSVWI 684
K+I + E++++ WI
Sbjct: 206 KLISNNSSVEKRFNPWI 222
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 70.9 bits (166), Expect = 9e-13
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Frame = +1
Query: 64 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 219
A +AVL+L AS RT TG V+DSGDGV+H +P+ EGY + I + +AGRD+T
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 220 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 345
++ ++L ER E + IKE+ Y+ D +E A
Sbjct: 100 FFVQQLLREREMGIPPEQSMETAKTIKERWGYICPDIAKEFA 141
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 403 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 579
+ + ERF PE F P F + + + E V N I C +D+R+ LY N V+SGG+TM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
Query: 580 PGIADRMQKEITGLAPSTIKI 642
R+Q++I + +K+
Sbjct: 256 RDFGRRLQRDIKRTVDARLKM 276
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1
Query: 469 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEI 612
E + + +S++ C +D RK L N V+ GGT M PG R+ +EI
Sbjct: 54 EEKSLATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEI 101
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 37.5 bits (83), Expect = 0.010
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Frame = +1
Query: 10 EKMTQIMFETFNSPAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVPIYEGYA 171
+ M +I+FE +N A+ A LS Y S +V+D+G +H VP++ G
Sbjct: 319 DAMDEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKV 378
Query: 172 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 351
+ A+ R + +L E +F ++ +KE CYV+ F ++M A
Sbjct: 379 IKKAVRR-----------QLHVLDE---TF-------VINQVKEDTCYVSSQFYKDMEIA 417
Query: 352 ---AASTSLEKSYELPD 393
++ + Y LPD
Sbjct: 418 RQRGKENTIVREYVLPD 434
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 433 PEALFQPSFLGMESCGIHETV 495
PE +FQPS LG+E GI ET+
Sbjct: 3 PEIIFQPSMLGLEQAGITETM 23
>SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5)
Length = 257
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -3
Query: 282 FPLSGGGERVTPLGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGV----GDTISGVEH 115
F +SG + D H++ + +TS V+ + G + D + T S E
Sbjct: 134 FGISGTANTEEQIDVDKHQITNKASTSSVEKANTAGTTGGTQDQHATQGNKASTCSFEEA 193
Query: 114 DTGGTTGGVQ 85
+T GTTGG Q
Sbjct: 194 NTAGTTGGTQ 203
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 32.3 bits (70), Expect = 0.38
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 106 TGIVLDSGDGVSHTVPI 156
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 1 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 117
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 246 LGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGVGDTISGVEHDTGG 103
L E + +V Q + GV S G+G G TISG D+GG
Sbjct: 1474 LQEAMMPIVSQQTCAAAMRRWGVVTSRMICGGFGAGSTISGCFGDSGG 1521
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 477 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDH-QDQDHR 653
R P+DR + HH RR H +HR H R++R+ +G+ L+ + D R
Sbjct: 830 RPPQDRHRRHHHRRRHHN----NKHRKHSREHSRRRHQRKHHKGNDAQETLEEIFEDDAR 885
Query: 654 SPREEV 671
+E V
Sbjct: 886 DEKENV 891
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 453 FLPGYGIVRHP-RDRVQLHHEV-RRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRA 626
F+ G G++ H + Q+ E R + G +HRH R +HH ++ R+ + + A
Sbjct: 894 FVNGGGMMEHELQSDSQISQETGARENDPGKKHKHRHRRHHHHRRQHNRKIKKHRRKHSA 953
Query: 627 LDHQ 638
H+
Sbjct: 954 RKHE 957
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = -1
Query: 206 PAKSRRRMAWGRA*PS*MGTVWETPSPESSTIPVVRPEAYSESTAW 69
P+ + +W P T W +PSP+ T P ++T+W
Sbjct: 93 PSPQYKTTSWSLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSW 138
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 7 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 117
+E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 543 KEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 579
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 189 EDGVGQSVTFVDGYGVGDTISGVEHDTGGTTGG 91
+DG G VDG GVGD G + D G GG
Sbjct: 9 DDGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGG 41
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 4 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 153
NR + +++ E S ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +3
Query: 432 SRGSLPAFLPGYGIVRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 611
+R ++P LPG H R R HH ++H ++ HH Q +
Sbjct: 930 ARPNMPGTLPGNYPESHKRHRHSHHHH------------YQHYQYNHHHDHQSHQHHDSH 977
Query: 612 HRPRALDHQ 638
H LDH+
Sbjct: 978 HHREVLDHK 986
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = +3
Query: 483 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 653
PRDR + E RRR P R+ R + Y PR RR+ R R D R
Sbjct: 854 PRDRRRRSPEHRRRREASPPRRDR--KRYDSPPRRRRRSPSPPPRRRRRDSYSPSRR 908
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 298 KEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPE 438
+EK+ L+ E E A + LEK +L + +G+ER RC +
Sbjct: 2983 REKIVTSDLESELETERALQANELEKQNKLLEKLSADLGHERSRCED 3029
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/67 (35%), Positives = 30/67 (44%)
Frame = +3
Query: 474 VRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 653
V HPR V +H HP V HR +H RQD DH + DH QD
Sbjct: 606 VVHPRRDV-VHPRQDVVHPRQDVDHHRQDVDHH------RQDV--DHHRQDADHHRQDVV 656
Query: 654 SPREEVL 674
PR++V+
Sbjct: 657 HPRQDVV 663
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +3
Query: 474 VRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 653
++HP ++ H + ++ P + HHVP + +A G+ R Q+ D+
Sbjct: 550 IQHPVEKAIQHAQEKKYQP----ELEKKTIKSHHVPGQDKTEARGEERIAVWSTQNGDYY 605
Query: 654 SPREE 668
R+E
Sbjct: 606 DQRDE 610
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,003,893
Number of Sequences: 59808
Number of extensions: 410215
Number of successful extensions: 1469
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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