Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31435
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    28   1.1  
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    27   2.0  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   4.6  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   6.1  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   6.1  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   8.1  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +3

Query: 375 DEPAYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPM----YSGRGGPPAVAGGYERD 542
           D+ AYD   YD++  Y+R +PA    N +   +     M    Y+G   P  V   Y  D
Sbjct: 20  DQYAYDSEVYDDQNAYQR-QPADAYSNEEFLDQADYDSMYGEGYNGYDYPTGVTESY-GD 77

Query: 543 HYVP 554
            Y P
Sbjct: 78  EYTP 81


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 164 IHEGPARSGARLRTRSAGGAL*RALCVRRGPAWVRADG 277
           I++ P +SG R+    AG  L   LC + G   +  DG
Sbjct: 163 IYQHPVQSGMRVLELGAGTGLVSILCAKMGSIVLATDG 200


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +3

Query: 357 EGTRRYDEPAYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMY 494
           E   R+D+P          A+   P P    P+G +Y+   P P Y
Sbjct: 232 ERRSRFDQPPSKRMALTSTARESVPAPLPSPPSGPIYTYTYPKPAY 277


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   LHLTAASYPWSAVASKNAGSVGAVAVDEV 93
           +H+ +   P   +A KNA S+GA  V+ V
Sbjct: 546 IHIYSVERPMKYIAMKNAHSLGATQVEWV 574


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 147 GARVARGRLRDAPCHRAWNLVH 82
           G RV    +RDA C+  W+  H
Sbjct: 421 GTRVTGQSIRDASCYFVWSFYH 442


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 252 PRRTHSARHRAPPADRVRS 196
           P R+H  RH APP  ++ S
Sbjct: 427 PERSHKHRHSAPPRSKLIS 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,612
Number of Sequences: 5004
Number of extensions: 38457
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)