Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31435
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 30 1.2
SB_48511| Best HMM Match : Ank (HMM E-Value=4.6e-20) 30 1.2
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 30 1.2
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_59335| Best HMM Match : rve (HMM E-Value=0.0065) 29 2.1
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 29 2.8
SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035) 29 2.8
SB_7620| Best HMM Match : Remorin_N (HMM E-Value=5.2) 29 2.8
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_26602| Best HMM Match : SNF (HMM E-Value=0) 29 3.7
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_52226| Best HMM Match : Cytadhesin_P30 (HMM E-Value=9) 28 6.4
SB_51034| Best HMM Match : Extensin_2 (HMM E-Value=0.038) 28 6.4
SB_46986| Best HMM Match : HEAT (HMM E-Value=2.5e-06) 28 6.4
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 28 6.4
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_44998| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_52772| Best HMM Match : rve (HMM E-Value=0.001) 27 8.5
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 27 8.5
SB_23288| Best HMM Match : MMR_HSR1 (HMM E-Value=8.3e-06) 27 8.5
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 27 8.5
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -3
Query: 333 SVRQGKQAPAVHKRP*GRDPSARTHAGPRRTHSARHRAPPADRVRSRAPDLAGPS 169
S RQ Q+P + R + H PRR +RA + R +SR+P+ A S
Sbjct: 370 SQRQRSQSPQRVQASPRRRSQSPDHVSPRRKSQTPNRASTSTRQQSRSPNRASTS 424
>SB_48511| Best HMM Match : Ank (HMM E-Value=4.6e-20)
Length = 753
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = -3
Query: 354 PLRCDSGSVRQGKQAPAVHKRP*G---RDPS-ARTHAGPRRTHSARHR----APPADRVR 199
P RC S S++ ++ H+RP R+P+ RT H R + + P RVR
Sbjct: 256 PARCSSTSLQTQREERDRHRRPQSAKPREPNRRRTVTFGESDHDTRQKSYQESVPESRVR 315
Query: 198 SRAPDLAGPSCMVRPEAGARVA 133
+ +P + P + P R++
Sbjct: 316 APSPQYSTPRSRIPPPIPPRIS 337
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 129 PVRHAPPPRDAPYMRDRPGPVRGYERGPPAAPYDERYAYGEDRRGFALMDRGPR 290
P H PP R + R P R + GPP P+ +R + + R DRGPR
Sbjct: 282 PDMHGPPDRGR-HDRGPPHDHRDFH-GPPDGPHGQRMQHHDIRGPDPRGDRGPR 333
>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 213 ADRVRSRAPDLAGPSCMVRPEAGARVAR-GRLR 118
ADRVRSR P GP + P+ GAR R GRLR
Sbjct: 508 ADRVRSRHPPRQGPGVIDVPQ-GARGGRGGRLR 539
>SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 354 VEGTRRYDEPAYDDRHYDERAQYERPRPAHHIPNGDMYS-RRSPA 485
V+G + YD P YD H + P + P D +S R+PA
Sbjct: 386 VDGYQTYDNPTYDTEHETHAEAHVNGYPTYDNPTCDTHSPARAPA 430
>SB_59335| Best HMM Match : rve (HMM E-Value=0.0065)
Length = 1020
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = -3
Query: 297 KRP*GRDPSARTHAGPRRTHSARHRAPPADRVRSRAPDLAGPSCMVRPEAGARVARGRLR 118
+RP G + A AR + A+R+ S P P R EAG R+A+
Sbjct: 535 QRPYGSAEPDKQAAEQAAHKPARTPSALAERITSPEPPATRPKHPGRVEAGRRLAK---- 590
Query: 117 DAPCHRAWNLVHRDRPHAARVL 52
WNL++R + A RVL
Sbjct: 591 -------WNLINRAKKEALRVL 605
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -3
Query: 210 DRVRSRAPDLAGPSCMVRPEAGARVARGRLRDAPCHRAWNLVHRDRPHAARV 55
D R+ P + +C+VR +GAR+ G CHR +H +RP + ++
Sbjct: 673 DDCRTSGPLVTDGNCLVRTISGARIISG----LSCHRP---IHHNRPFSKKL 717
>SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035)
Length = 582
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 228 HRAPPADRVRSRAPDLAGPSCMV 160
+RAPP R + P+++GP CM+
Sbjct: 18 YRAPPRGRRDLKVPEVSGPYCMI 40
>SB_7620| Best HMM Match : Remorin_N (HMM E-Value=5.2)
Length = 330
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 153 RDAPYMRDRPGPVRG--YERGPPAAPYDERYAYGEDRR 260
RDAPY R RPG +G + G P E A G D +
Sbjct: 274 RDAPYPRFRPGTAKGVSWRSGTRHTPRRESVALGLDSK 311
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 28.7 bits (61), Expect = 3.7
Identities = 38/143 (26%), Positives = 46/143 (32%), Gaps = 3/143 (2%)
Frame = +3
Query: 129 PVRHAPPPRDAPYMRDRPGPVRGYE---RGPPAAPYDERYAYGEDRRGFALMDRGPRDXX 299
P + P D GP RG++ RGPP D G+ G+ RG
Sbjct: 769 PYDNRGKPGDVRRRSPPSGPSRGFQDRDRGPPGRGRDAPPGRGQ---GYTNRGRGQPGNR 825
Query: 300 XXXXXXXXDERYQNHISVVEGTRRYDEPAYDDRHYDERAQYERPRPAHHIPNGDMYSRRS 479
D R + S GTR YDDR R P P + R S
Sbjct: 826 YRDQGAPWDRRPERDNSRDRGTR-----PYDDRDRRPRDASPPPGPGYREQRSWDGRRGS 880
Query: 480 PAPMYSGRGGPPAVAGGYERDHY 548
P P + PP A R Y
Sbjct: 881 PPPPMA---PPPRSASPNHRPPY 900
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +3
Query: 366 RRYDEPAYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPPA 518
RR D DR D + R R D Y RSP+P + G PPA
Sbjct: 438 RRRDRSRSRDRSRDRDRRRHRDRSRERGGGRDRYRERSPSPRRA--GAPPA 486
>SB_26602| Best HMM Match : SNF (HMM E-Value=0)
Length = 721
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 153 RDAPYMRDRPGPVRGYERGPPAAPYDERYAY 245
R P D PV GY RG P +P+D+R Y
Sbjct: 51 RGKPSPFDDRAPVLGYHRGKP-SPFDDRAPY 80
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 19 AASYP-WSAVASKNAGSVGAVAVDEVPCAVAWSVAEAAPCDTRPRLGTHHT*GTGQVRCA 195
AA+ P SAVA +N + V ++EVP V E+ D T GTGQ A
Sbjct: 352 AATEPSQSAVAEENKDTQNDVPIEEVPTIVEPEPVESEAKDEDKEKAPEATEGTGQAVSA 411
Query: 196 A 198
+
Sbjct: 412 S 412
>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 28.3 bits (60), Expect = 4.8
Identities = 36/123 (29%), Positives = 48/123 (39%), Gaps = 11/123 (8%)
Frame = +3
Query: 171 RDRPGPVRGY----ERGPPAAPYDERYAYGEDRRGFALMDRGPRDXXXXXXXXXXDERYQ 338
R GPVRGY ERGP D R RG +RGPR R +
Sbjct: 152 RAERGPVRGYHKTHERGPIEKMPDRR-ERSPYERGHERPERGPRTPDGYDREDEGKGR-R 209
Query: 339 NHI--SVVEGTRRYDEPAYDDRHYDERAQYERPRPAHHIPN-GDMYSRRSPA----PMYS 497
+ S ++G+R+ D+ + + E R R A + N G R A P+ S
Sbjct: 210 GFVDDSPIQGSRKGDDNVHPRGRFPEEGFRGRGRGADWMENEGRQRGRDGDAHLSRPVDS 269
Query: 498 GRG 506
G G
Sbjct: 270 GHG 272
>SB_52226| Best HMM Match : Cytadhesin_P30 (HMM E-Value=9)
Length = 264
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 147 PPRDAPYMRDRPGPVRGYERGPP-AAPYDERYAYGEDRRG 263
PP + P R PG +GY++ P D+ Y Y R G
Sbjct: 180 PPTNNPMFRPFPGNPQGYQQPTTNQLPTDQAYRYRRPRGG 219
>SB_51034| Best HMM Match : Extensin_2 (HMM E-Value=0.038)
Length = 354
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 420 YERPRPAH-HIPNGDMYSRRSPAPMYSGRGGPPAVAGGYERDHYVP 554
Y + RPAH H P G M PAP PP A GY R Y P
Sbjct: 81 YYQGRPAHWHQPPGGM--SYPPAPP------PPGHAAGYRRGEYPP 118
>SB_46986| Best HMM Match : HEAT (HMM E-Value=2.5e-06)
Length = 486
Score = 27.9 bits (59), Expect = 6.4
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -3
Query: 318 KQAPA-VHKRP*GRDPSARTHAGPRRTHSARHRAPPADRVRSRAPDLAGPSCMVRPEA-G 145
K PA +H++ + RT P SARHR P SR+ GP +R G
Sbjct: 286 KHVPANLHRQIHDIVETLRTKGLPSDVSSARHRKNPGSGSHSRSNSGTGPKGGIRASTNG 345
Query: 144 ARVARGRLRDAPCHRAWNLVHRDRP 70
+ ++ R++ R+ H+D P
Sbjct: 346 SLLSPASSRESSRGRS---AHQDTP 367
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 459 DMYSRRSPAPMYSGRGGPPAVAGGYERDHYVPQ 557
D YSR PA YS +G PP Y PQ
Sbjct: 667 DEYSRPQPAQQYSSQGLPPQAPQQYSWQGPPPQ 699
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 318 KQAPAVHKRP*GRDPSARTHAGPRRTHSARHRAPPADRVRSRAP 187
K++P VH R +P RR+HS H R RSR+P
Sbjct: 189 KESP-VHHRSLSPEPRRGYRDQRRRSHSPAHHRRSRSRSRSRSP 231
>SB_44998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 324 DERYQNHISVVEGTRRYDEPAYDDRHYDERAQYER 428
D+R +H ++ + R YD A DDR YD +A +R
Sbjct: 48 DDRAHDHQALDD--RAYDHQALDDRAYDHQALDDR 80
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 324 DERYQNHISVVEGTRRYDEPAYDDRHYDERAQYER 428
D+R +H ++ + R YD A DDR YD +A +R
Sbjct: 58 DDRAYDHQALDD--RAYDHQALDDRAYDHQALDDR 90
>SB_52772| Best HMM Match : rve (HMM E-Value=0.001)
Length = 646
Score = 27.5 bits (58), Expect = 8.5
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = -3
Query: 261 HAGPRRTHSARHRAPPADRVRSRAPDLAGPSCMVRPEAGARVARGRLRDAPCHRAWNLVH 82
H P RT SA A+R+RS P P R EAG R+A+ WN ++
Sbjct: 69 HQEPARTPSAL-----AERIRSPEPPATRPKHPGRVEAGRRLAK-----------WNRIN 112
Query: 81 RDRPHAARVL 52
R + RV+
Sbjct: 113 RAKKETLRVV 122
>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 129 PVRHAPPPRDAPYMRDRPGPVRGYERGPPAAP 224
PV H PP+ P RD P P PP P
Sbjct: 259 PVHHGMPPQYGPGRRDMPPPGAPPGMLPPGMP 290
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +3
Query: 327 ERYQNHISVVEGTRRYDEPAYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRG 506
E+ + H S + D+ DD+H R + E+ + HH N S S P G
Sbjct: 837 EKPEKHTSRPRHDSKSDKKNSDDKHRRHRRRREKKKQRHHSGND---STGSDIPASPGIA 893
Query: 507 GPPA 518
PA
Sbjct: 894 NSPA 897
>SB_23288| Best HMM Match : MMR_HSR1 (HMM E-Value=8.3e-06)
Length = 210
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 270 ARTHAGPRRTHSARHRAPPADRVRSRA 190
A +GP + H RH P AD+ + R+
Sbjct: 2 ADDESGPSKAHRKRHSGPKADKKKKRS 28
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 135 RHAPPPRDAPYMRDRPGPVRGYERGPPAAPY--DERYAYGEDRR 260
R PPPRDA D P P Y+R PY D Y + +D R
Sbjct: 228 RDEPPPRDAYGRHDLPPPRDPYDR-ERRDPYERDPYYDHRDDPR 270
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Frame = +3
Query: 144 PPPRDAPYMRDRPGPVR-GYERGPPAAPYDERYAYG-------EDRRGFALMDRGP 287
PPP P ++ ++RGP P+D+RY YG ++R DRGP
Sbjct: 78 PPPPPPPRRDEKSYDYDDSWDRGP-GRPHDDRYDYGKFGRPRYDERYDLERFDRGP 132
>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1867
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -3
Query: 489 WGQVIFGCTCPR*VCGEQVSGVHTVRAR 406
W ++ P+ CG+ + GVHT+ ++
Sbjct: 1577 WNLILCALLLPKAACGDDLYGVHTITSK 1604
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,096,154
Number of Sequences: 59808
Number of extensions: 410626
Number of successful extensions: 1378
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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