Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31435
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    26   0.24 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.72 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.72 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.9  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 321 GKQAPAVHKRP*--GRDPSARTHAGPRRTHSARHR 223
           GK+ P   KR    GR P+A T  GP+R H+ R R
Sbjct: 16  GKRKPIRKKRKFELGR-PAANTKLGPQRIHTVRTR 49


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 31  PWSAVASKNAGSVGAVAVDEVPC 99
           PWS ++ + A  V  + VD+  C
Sbjct: 285 PWSYMSGEKANEVATILVDDCGC 307


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 31  PWSAVASKNAGSVGAVAVDEVPC 99
           PWS ++ + A  V  + VD+  C
Sbjct: 285 PWSYMSGEKANEVATILVDDCGC 307


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 579 VPMQVACIVVHSDLSRNLRPLQVDLHARNTWGQVIF 472
           +   VA  VV + L  N      D H  + W +V+F
Sbjct: 301 IMFMVASSVVSTILILNYHHRNADTHEMSEWVKVVF 336


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/63 (17%), Positives = 25/63 (39%)
 Frame = +3

Query: 372 YDEPAYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPPAVAGGYERDHYV 551
           Y+   Y++ +Y+        +  ++I N +      P P+Y G   P  +         +
Sbjct: 333 YNNNNYNNNNYNNNYNNNCKKLYYNIINIEQIPVPVPVPIYCGNFPPRPMGPWISIQEQI 392

Query: 552 PQY 560
           P++
Sbjct: 393 PRF 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,158
Number of Sequences: 438
Number of extensions: 3532
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)