Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31431
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0182 + 28243881-28245406,28245460-28245505,28246309-282464... 32 0.56
10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495... 30 2.2
05_04_0034 + 17375987-17376095,17376716-17376885 30 2.2
04_03_0881 + 20528257-20528760,20528837-20529283 29 5.2
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490... 28 6.9
01_01_0894 + 7047273-7048277,7049124-7049549 28 6.9
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377... 28 9.1
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745... 28 9.1
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501... 28 9.1
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331... 28 9.1
>05_07_0182 +
28243881-28245406,28245460-28245505,28246309-28246400,
28246513-28246635,28246753-28246984
Length = 672
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 654 FPWPPSCCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKIG 526
FP PP+ H P P FLGA +L L+HP P+ L + G
Sbjct: 10 FPSPPATLHHHPPP---PKSLFLGA-SLPLLHPPPPLRLLRPG 48
>10_01_0003 +
46158-46428,46588-46706,46819-46928,48977-49415,
49511-49633,49805-50106,50143-50350,50729-51448
Length = 763
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 619 WSLM--TAGRWPWEVGIR*GVCNDSPAEATSPEM 714
WSL+ TAG WP EV R +EA SPE+
Sbjct: 684 WSLLDPTAGEWPLEVARRLAELGLKCSEAASPEL 717
>05_04_0034 + 17375987-17376095,17376716-17376885
Length = 92
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 593 RSWDTMKGVGRS*QQDGGHGKSESAKECATTHLPKQPALKW 715
R W +G R + +GGHG E +E A ++ A W
Sbjct: 18 RQWRGNQGAARCGEPEGGHGWLEGGEEVAGARRERRAASHW 58
>04_03_0881 + 20528257-20528760,20528837-20529283
Length = 316
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 699 CFGR*VVAHSLADSDFPWPPSCCHERPTPF 610
C GR + + A S +PW PSC H R + F
Sbjct: 35 CHGRHQLCYPPAPSSWPW-PSCRHPRTSSF 63
>07_03_1231 +
25047067-25047262,25047876-25048045,25048897-25049030,
25049122-25049369,25049799-25049904,25049992-25050130,
25050258-25050385,25050472-25050733
Length = 460
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 539 LPKLAHLAPSSDLRLHRSSKPEFSPI 462
L L +LAP DLR+ SSKP F I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284
>01_01_0894 + 7047273-7048277,7049124-7049549
Length = 476
Score = 28.3 bits (60), Expect = 6.9
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = -2
Query: 651 PWPPSCCHERPTPFMVSHERFLGALTLRLVHPTA----PVLLTKIGPLGTVIRSPASSFE 484
P PPS R PF+ H LG+L R + A PV+L G + TV+ S A+S +
Sbjct: 47 PLPPS---PRGVPFL-GHLPLLGSLPHRKLRSMAEAHGPVMLLWFGRVPTVVASSAASAQ 102
Query: 483 *AGVLTHLKFENRLR 439
A F +R R
Sbjct: 103 EAMRARDAAFASRAR 117
>11_01_0489 +
3776563-3776692,3776995-3777073,3777532-3777840,
3778828-3778898,3778975-3779213,3779306-3779383,
3779734-3780156,3780416-3780661,3780886-3780978,
3781480-3781527
Length = 571
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 278 KSIVGTGYRGERLIEPSSSWFRPKFPSG 361
+ + GTG + PSS+WF P+ SG
Sbjct: 12 RCVFGTGPLPPASLSPSSAWFDPELSSG 39
>08_02_0678 - 19971416-19971930,19971970-19973347,19974122-19974518,
19974533-19974645,19977436-19977903,19977935-19978059,
19978192-19978452,19984254-19984647
Length = 1216
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -3
Query: 659 PTSHGHRPAVMSDQRLSWCPMSVF 588
P + H P D+++ WCP +F
Sbjct: 1075 PVNQDHDPKDDEDRKIQWCPTGIF 1098
>04_03_0897 -
20646750-20646918,20647927-20648038,20649650-20650108,
20650237-20650330,20650449-20650525,20650637-20650688,
20650770-20650927,20651191-20651281,20651465-20652529
Length = 758
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 205 DGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKT 315
DG+ +V + SGE D+S ++Q+D+ ++ G+K+
Sbjct: 436 DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472
>01_06_1087 -
34430521-34430899,34432336-34432806,34432926-34433112,
34433470-34433599,34433794-34434125,34434566-34435050,
34435185-34435752,34436579-34436640,34437569-34437636
Length = 893
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 459 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 298
K E LRSF + LP K+ I A++ GN+ GRN GS L L+
Sbjct: 93 KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,533,820
Number of Sequences: 37544
Number of extensions: 489912
Number of successful extensions: 1073
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -