Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31429
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    97   2e-22
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.58 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   7.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 97.1 bits (231), Expect = 2e-22
 Identities = 45/90 (50%), Positives = 64/90 (71%)
 Frame = +3

Query: 267 EINPDGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGSFSWTSPEGVPISVNYVA 446
           E+N DG+Y   +ET+NGI+ QE G P+ +       PVV+QGS S+T+P+G  +S+ YVA
Sbjct: 35  EVNFDGNYINNFETSNGISHQESGQPKQVDNE---TPVVSQGSDSYTAPDGQQVSITYVA 91

Query: 447 DENGYQPTGNAIPTSPPVPEQIARALAYIA 536
           DENG+Q  G+ IPT+PP+P +I RAL + A
Sbjct: 92  DENGFQVQGSHIPTAPPIPPEIQRALEWNA 121


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 411  PEGVP-ISVNYVADENGYQPTGNAIPTSPPVPEQIARA 521
            PE VP + ++    + G    G+   TSPP P  I+RA
Sbjct: 1369 PERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRA 1406


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 233 LRYLGYYSDGGNRGDRDG 180
           LR+ G  S GGN G R+G
Sbjct: 139 LRHKGDGSPGGNGGPRNG 156


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 233 LRYLGYYSDGGNRGDRDG 180
           LR+ G  S GGN G R+G
Sbjct: 139 LRHKGDGSPGGNGGPRNG 156


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +3

Query: 219 PKVSEGYGAETVKFGNEINPDGSYTYFYETNN 314
           PK+      +T+   N  N +    Y Y  NN
Sbjct: 79  PKIISSLSNKTIHNNNNYNNNNYNNYNYNNNN 110


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +2

Query: 482 PHFPTSA*ADRSCSCLHRQEH 544
           P  PT    D  C+ LH   H
Sbjct: 455 PQLPTEESVDALCNTLHHWHH 475


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 406 VQENEPCATTGTAGGFPPRLRGTPCS 329
           V ++E  + T TAG FP  +  T  S
Sbjct: 714 VSKHEEVSRTSTAGQFPTNVATTVTS 739


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 246 ETVKFGNEINPDGSYTYFYET 308
           E +KF N   P G  T F+E+
Sbjct: 236 EIIKFVNIFFPGGKKTTFFES 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,468
Number of Sequences: 438
Number of extensions: 5535
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)