Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31423
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.17
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.69
07_03_0846 - 21983581-21986055 29 1.6
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 1.6
07_03_1086 + 23858419-23859423,23859527-23859610 29 2.8
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 4.9
07_03_0626 + 20060013-20060273,20061017-20061274 27 6.5
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 6.5
01_01_1235 - 10017728-10017766,10018891-10019352 27 6.5
10_08_0113 - 14896341-14897153 27 8.6
08_02_1485 - 27466761-27467753 27 8.6
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 8.6
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 8.6
01_05_0118 + 18335065-18335553 27 8.6
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 8.6
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -3
Query: 501 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 373
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.69
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 233 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 367
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -3
Query: 375 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 226
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 146 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 244
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 2.8
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +2
Query: 86 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 250
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 251 GKDMLTVEPRESGGSK 298
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 4.9
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 224 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 397
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 398 TRASR 412
TRA+R
Sbjct: 64 TRAAR 68
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 245 RLGWLRP*RRSGIIP 201
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 252 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 356
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_01_1235 - 10017728-10017766,10018891-10019352
Length = 166
Score = 27.5 bits (58), Expect = 6.5
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +2
Query: 167 GRAAGGAKLPSAGLCLNASKAEASLAESGKDM--LTVEPR---ESGGSKQCDFTSRVSHS 331
G GGA + + L+A+ L G + L + PR S + TS + S
Sbjct: 66 GEDGGGAGVRACSSDLSAAAFADELFREGALLRPLKLPPRLQTPSASAAASAATSPTAAS 125
Query: 332 KRETRRRSPFGSRRS 376
K + RSPF SRRS
Sbjct: 126 KAASSSRSPFASRRS 140
>10_08_0113 - 14896341-14897153
Length = 270
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +1
Query: 433 LSSMSGLGIVCRRL----PFLAGCCAR 501
L++++GLGI RR P LAGCC R
Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 291 PPDSRGSTVSISLPDSARLASALEAFRHNPA 199
PP + G +S +P A LA++L + NPA
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPA 69
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 284 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 382
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = -3
Query: 393 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 214
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 242 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 370
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 498 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS-IDLRDPNGLRR 346
S +PR+ R YS R R+ RD+R ++++ S D R P G R
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPR 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,803,638
Number of Sequences: 37544
Number of extensions: 317331
Number of successful extensions: 913
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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