Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31423
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   0.77 
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    30   0.77 
At3g53440.2 68416.m05898 expressed protein                             30   1.0  
At3g53440.1 68416.m05897 expressed protein                             30   1.0  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    29   2.4  
At5g17160.1 68418.m02010 expressed protein                             27   5.4  
At4g27120.2 68417.m03898 expressed protein                             27   5.4  
At4g27120.1 68417.m03897 expressed protein                             27   5.4  
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi...    27   5.4  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   5.4  
At2g07771.2 68415.m00888 cytochrome c biogenesis protein-related       27   7.2  
At1g14740.1 68414.m01762 expressed protein                             27   7.2  
At2g07681.1 68415.m00923 cytochrome c biogenesis protein, putati...    27   9.5  
At1g48600.2 68414.m05434 phosphoethanolamine N-methyltransferase...    27   9.5  
At1g48600.1 68414.m05435 phosphoethanolamine N-methyltransferase...    27   9.5  

>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 59  TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 235
           T+V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 236 SLAESGKD 259
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 474 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 301
           K S +  +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -3

Query: 477 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 298
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 297 LEPPDSRGSTVSIS 256
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -3

Query: 477 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 298
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 297 LEPPDSRGSTVSIS 256
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
           low similarity to nuclear matrix constituent protein 1
           (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = -3

Query: 483 QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 304
           +E K+S D S+  H  E    + S  A  KK+ +S+  +D    +  +S  E     +++
Sbjct: 95  EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152

Query: 303 HCLEPPDSRGSTVS 262
            C E   S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166


>At5g17160.1 68418.m02010 expressed protein
          Length = 569

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
 Frame = -3

Query: 501 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECE 322
           PST  R  R+ +T  +EP+  ++L     SR  R   K+ + D+ D   + + V++ E +
Sbjct: 65  PSTATRTTRRKTTTKAEPQPSSQLV----SRSCRSTSKSLAGDM-DQENINKNVAQ-EMK 118

Query: 321 TRLVK--SHCLEPPDSRGSTVSISLPDS 244
           T  VK  ++ L+ P + GST   S   S
Sbjct: 119 TSNVKFEANVLKTP-AAGSTRKTSAATS 145


>At4g27120.2 68417.m03898 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 164 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 340
           + RA GG ++        AS + +++ E+G      +  E+GG++ +          +RE
Sbjct: 47  VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106

Query: 341 TRRRSPFGSRRS 376
            +R++   +R S
Sbjct: 107 AQRQAEEATRES 118


>At4g27120.1 68417.m03897 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 164 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 340
           + RA GG ++        AS + +++ E+G      +  E+GG++ +          +RE
Sbjct: 47  VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106

Query: 341 TRRRSPFGSRRS 376
            +R++   +R S
Sbjct: 107 AQRQAEEATRES 118


>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 638

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = +2

Query: 116 TAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDM 262
           T  Y    S G LVH L      A  PSA    N  +   SLAE+  DM
Sbjct: 13  TITYYHPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDM 61


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 225 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 365
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At2g07771.2 68415.m00888 cytochrome c biogenesis protein-related
          Length = 256

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 136 VPLVLSSITIATTSHQ*GKTNLSHDGLNPAHVPFDG*TIQRLANF 2
           +P++ SS+    TSHQ G  ++S  G +  HVP     +   ANF
Sbjct: 161 IPIIKSSVNWWNTSHQPG--SISRSGTS-IHVPMPIPILSNFANF 202


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 182 GAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK--QCDFTSRVSHSKRETRRRS 355
           G +L  + LC N+ K   SL + GK+++T     S   K  + DF +    +   ++R++
Sbjct: 67  GNELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDKWVERDFFNLREMNPNSSKRKA 126


>At2g07681.1 68415.m00923 cytochrome c biogenesis protein, putative
           strong similarity to cytochrome c biogenesis protein
           [Pisum sativum] GI:4850219, ABC-type heme transporter
           subunit [Oryza sativa (japonica cultivar-group)]
           GI:1395188; contains Pfam profile PF01578: Cytochrome C
           assembly protein
          Length = 256

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 136 VPLVLSSITIATTSHQ*GKTNLSHDGLNPAHVPFDG*TIQRLANF 2
           +P++ SS+    TSHQ G  + S   +   HVP     +   ANF
Sbjct: 161 IPIIKSSVNWWNTSHQPGSISRSSTSI---HVPMPIPILSNFANF 202


>At1g48600.2 68414.m05434 phosphoethanolamine N-methyltransferase 2,
           putative (NMT2) very similar to |PEM2_ARATH Putative
           phosphoethanolamine N-methyltransferase 2 (EC 2.1.1.103)
           (SP:Q944H0){Arabidopsis thaliana}; very similar to
           Halotolerance protein Hal3b (SP:P94063)[Arabidopsis
           thaliana]; to similar to GB:AAF61950 from [Spinacia
           oleracea]
          Length = 491

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 480 ERKSS-TDYSEPRHRTELYPDLRSRDA 403
           +RKS+ T Y EPR  T+++ + ++RDA
Sbjct: 168 KRKSNPTHYREPRFYTKVFQECQTRDA 194


>At1g48600.1 68414.m05435 phosphoethanolamine N-methyltransferase 2,
           putative (NMT2) very similar to |PEM2_ARATH Putative
           phosphoethanolamine N-methyltransferase 2 (EC 2.1.1.103)
           (SP:Q944H0){Arabidopsis thaliana}; very similar to
           Halotolerance protein Hal3b (SP:P94063)[Arabidopsis
           thaliana]; to similar to GB:AAF61950 from [Spinacia
           oleracea]
          Length = 475

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 480 ERKSS-TDYSEPRHRTELYPDLRSRDA 403
           +RKS+ T Y EPR  T+++ + ++RDA
Sbjct: 152 KRKSNPTHYREPRFYTKVFQECQTRDA 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,401,109
Number of Sequences: 28952
Number of extensions: 234065
Number of successful extensions: 599
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)