Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31417
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   7.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.0  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   9.2  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 327  LRVAPEEHPVLLTEAPLNPKANREKM 404
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 335 DTQLIVEGVVPDLLHVI 285
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 702 IAELLLDVTNDFPSQRWW 649
           ++E+L+D T DF  +++W
Sbjct: 50  VSEVLMDFTLDFYFRQFW 67


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 621  ILTERGYSFTTTAERGNRS*HQGEALL 701
            +L ++G    TTA   N+   QG+ ++
Sbjct: 1132 LLAQKGLKLATTASHANQLNRQGKQVI 1158


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -1

Query: 502 TIPVVRPEAYSESTAWMATYMAGELKVSNMIWVIFSL 392
           T+P  + E   +  AWM     G L+  N  +  F +
Sbjct: 33  TLPGYKIECVGDDIAWMKFDKEGRLRAINPEYGFFGV 69


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 90  GMCKAGFAGD 119
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,649
Number of Sequences: 438
Number of extensions: 3822
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)