Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31416
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor...   193   1e-48
UniRef50_A2FYW8 Cluster: Putative uncharacterized protein; n=14;...    35   0.71 
UniRef50_UPI0000D56367 Cluster: PREDICTED: similar to CG30042-PA...    32   6.6  
UniRef50_Q5KIV6 Cluster: Putative uncharacterized protein; n=1; ...    32   6.6  

>UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor;
           n=1; Bombyx mori|Rep: Larval cuticle protein LCP-30
           precursor - Bombyx mori (Silk moth)
          Length = 239

 Score =  193 bits (471), Expect = 1e-48
 Identities = 99/149 (66%), Positives = 100/149 (67%)
 Frame = +1

Query: 1   VFLAICLCLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYI 180
           VFLAICL LTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYI
Sbjct: 3   VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYI 62

Query: 181 PDNSGAYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDLTKYLGDAYKGSSIXXXXXX 360
           PDNSGAYN                             KEDL+KYLGDAYKGSSI      
Sbjct: 63  PDNSGAYNGDRGDRGAAGGFYTGSGTAGGPGGAYVGTKEDLSKYLGDAYKGSSIVPLPVV 122

Query: 361 XXXXXXXXXXXXXASKVVTPTYVASKVVP 447
                        ASKVVTPTYVASKVVP
Sbjct: 123 KPTIPVPVTPTYVASKVVTPTYVASKVVP 151


>UniRef50_A2FYW8 Cluster: Putative uncharacterized protein; n=14;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 645

 Score = 35.1 bits (77), Expect = 0.71
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 448 VVPPCWQRMWV*PPCWQRMWV*LAREW*ASRRAG--EQCWIPCKHHQGIW 305
           VV  CWQR+   P CWQR+ V + + W   +RAG  ++CW       G W
Sbjct: 464 VVGECWQRVVAVPRCWQRV-VAVPKCW---QRAGAEDECWQRVGVVSGCW 509



 Score = 34.3 bits (75), Expect = 1.2
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -2

Query: 445 VPPCWQRMWV*PPCWQRMWV*LAREW*ASRRAGEQCWIPCKHHQGIW 305
           VP CWQR  V   CWQR+ V + R W     A  +CW      +G W
Sbjct: 325 VPRCWQRAGVVGECWQRV-VAVPRCW-QRVVAVPKCWQIAGAEEGCW 369



 Score = 33.1 bits (72), Expect = 2.9
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -2

Query: 448 VVPPCWQRMWV*PPCWQRMWV*LAREW*ASRRAGEQCW 335
           VV  CWQR+   P CWQR+ V + + W     A E CW
Sbjct: 204 VVGECWQRVVAVPRCWQRVVV-VPKCW-QIAGAEEGCW 239



 Score = 32.7 bits (71), Expect = 3.8
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 445 VPPCWQRMWV*PPCWQRMWV*LAREW*ASRRAG--EQCW 335
           VP CWQR  V   CWQ + V + R W   +RAG  ++CW
Sbjct: 45  VPRCWQRAGVVSGCWQTV-VAVPRCW---QRAGVEDECW 79



 Score = 32.7 bits (71), Expect = 3.8
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -2

Query: 445 VPPCWQRMWV*PPCWQRMWV*LAREW*ASRRAGEQCWIPCKHHQGIW 305
           VP CWQR  V   CWQR+ V + R W        +CW      +G W
Sbjct: 195 VPRCWQRAGVVGECWQRV-VAVPRCW-QRVVVVPKCWQIAGAEEGCW 239



 Score = 32.7 bits (71), Expect = 3.8
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 448 VVPPCWQRMWV*PPCWQRMWV*LAREW*ASRRAG--EQCW 335
           VV  CWQR  V   CWQR+ V +   W   +RAG   +CW
Sbjct: 284 VVSGCWQRAGVVSECWQRV-VAVEESW---QRAGVVSECW 319



 Score = 32.7 bits (71), Expect = 3.8
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -2

Query: 448 VVPPCWQRMWV*PPCWQRMWV*LAREW*ASRRAGEQCW 335
           VV  CWQR+   P CWQR+ V + + W     A E CW
Sbjct: 334 VVGECWQRVVAVPRCWQRV-VAVPKCW-QIAGAEEGCW 369



 Score = 32.7 bits (71), Expect = 3.8
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 445 VPPCWQRMWV*PPCWQRMWV*LAREW*ASRRAG--EQCW 335
           VP CWQR  V   CWQR  V ++  W   +RAG   +CW
Sbjct: 575 VPRCWQRAGVEDECWQRAGV-VSGCW---QRAGVVSECW 609



 Score = 32.3 bits (70), Expect = 5.0
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 448 VVPPCWQRMWV*PPCWQRMWV*LAREW*ASRRAG--EQCWIPCKHHQGIW 305
           VV  CWQR  V   CWQR+ V +   W   +RAG    CW       G W
Sbjct: 594 VVSGCWQRAGVVSECWQRI-VAVEESW---QRAGVVSGCWQRAGVVSGCW 639



 Score = 31.9 bits (69), Expect = 6.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 436 CWQRMWV*PPCWQRMWV*LAREW*ASRRAGEQCW 335
           CWQR+ V   CWQR+ V +   W  +   GE CW
Sbjct: 78  CWQRVGVEEECWQRV-VAVEESWQRAGVVGE-CW 109


>UniRef50_UPI0000D56367 Cluster: PREDICTED: similar to CG30042-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG30042-PA - Tribolium castaneum
          Length = 275

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +1

Query: 163 NSGRYIPDNSGAYN 204
           N GRY PDNSGAYN
Sbjct: 25  NDGRYYPDNSGAYN 38


>UniRef50_Q5KIV6 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 332

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 248 DPVLLEVPEEPTSEPRRTSPNTLVMLTRDP 337
           DPV L VP+ P S PR++ P+T +  +  P
Sbjct: 69  DPVSLPVPQTPCSSPRQSHPSTPISWSPSP 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.317    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,028,299
Number of Sequences: 1657284
Number of extensions: 6633994
Number of successful extensions: 21270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21190
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)