Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31416
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 31 0.44
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 31 0.58
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 29 1.8
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024) 29 2.3
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 28 3.1
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05) 27 5.4
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30) 27 9.5
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 31.9 bits (69), Expect = 0.25
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP+ A W+HP A WYH
Sbjct: 228 HPNKTQANWNHPTKTQANWYH 248
Score = 29.9 bits (64), Expect = 1.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 383 SHPHTLPARWSHPHTLPARWYH 448
+HP A W HP A WYH
Sbjct: 237 NHPTKTQANWYHPTKTQANWYH 258
Score = 29.9 bits (64), Expect = 1.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W HP A WYH
Sbjct: 258 HPTKTQANWYHPSKTQANWYH 278
Score = 29.9 bits (64), Expect = 1.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W HP A WYH
Sbjct: 458 HPTKTQANWYHPSKTQANWYH 478
Score = 29.9 bits (64), Expect = 1.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W HP A WYH
Sbjct: 468 HPSKTQANWYHPTKTQANWYH 488
Score = 29.9 bits (64), Expect = 1.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W HP A WYH
Sbjct: 478 HPTKTQANWYHPSKTKANWYH 498
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W HP A WYH
Sbjct: 248 HPTKTQANWYHPTKTQANWYH 268
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W HP A WYH
Sbjct: 508 HPTKTQANWYHPTKTQANWYH 528
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP PA HP+ A WYH
Sbjct: 208 HPTKTPAYLCHPNKTQANWYH 228
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP+ A W HP+ A W H
Sbjct: 218 HPNKTQANWYHPNKTQANWNH 238
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W HP WYH
Sbjct: 338 HPTKTQANWYHPSKTQVNWYH 358
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W HP + WYH
Sbjct: 488 HPSKTKANWYHPIKTQSNWYH 508
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP + W HP A WYH
Sbjct: 498 HPIKTQSNWYHPTKTQANWYH 518
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W+HP A W H
Sbjct: 178 HPTKTQANWNHPSKTRANWNH 198
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W+HP A W H
Sbjct: 78 HPTKTHANWNHPSKTRANWNH 98
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 31.1 bits (67), Expect = 0.44
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W+HP A WYH
Sbjct: 383 HPTKTQANWNHPSKTQANWYH 403
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W HP A WYH
Sbjct: 473 HPAKTQANWYHPTKTQANWYH 493
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W HP A WYH
Sbjct: 649 HPTKTQANWYHPTKTQANWYH 669
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 383 SHPHTLPARWSHPHTLPARWYH 448
+HP A W HP + WYH
Sbjct: 392 NHPSKTQANWYHPPKTQSNWYH 413
Score = 28.7 bits (61), Expect = 2.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP+ A W H + + WYH
Sbjct: 193 HPYKTQANWCHTSKIQSNWYH 213
Score = 28.7 bits (61), Expect = 2.3
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W HP + WYH
Sbjct: 503 HPTKTQANWYHPSKTQSNWYH 523
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W HP WYH
Sbjct: 483 HPTKTQANWYHPTKTQCNWYH 503
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP W HP A WYH
Sbjct: 493 HPTKTQCNWYHPTKTQANWYH 513
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 383 SHPHTLPARWSHPHTLPARWYH 448
+HP A W HP+ A W H
Sbjct: 282 NHPIKTQANWCHPNKTQANWCH 303
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W+HP A W H
Sbjct: 313 HPTKTQANWNHPSKTQANWNH 333
>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 1021
Score = 30.7 bits (66), Expect = 0.58
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 73 YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 183
YNR+ + P++ +PGR Y PGR DP GR P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 429 NVCGCDHLAGNVCGCDWHGNGRL 361
N GC+ GN GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404
>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
Length = 180
Score = 28.7 bits (61), Expect = 2.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP+ A W H + + WYH
Sbjct: 38 HPYKTQANWCHTSKIQSNWYH 58
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 386 HPHTLPARWSHPHTLPARWYH 448
HP A W+HP A W H
Sbjct: 158 HPTKTHANWNHPSKTRANWNH 178
>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 438 LAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 310
L GN CG L GN CG +GN GN +G+ + V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -3
Query: 423 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 343
CG CD AG V CDW G+G L D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698
>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 251 PVLLEVPEEPTSEPRRTSPNTLVMLTRDPA 340
PVL +P S PRR S +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140
>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
Length = 304
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 251 PVLLEVPEEPTSEPRRTSPNTLVMLTRDPA 340
PVL +P S PRR S +LTR PA
Sbjct: 86 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115
>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1668
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 447 WYHLAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGS 331
WYH C L GN+ D++G+ L G G N S
Sbjct: 1288 WYH----ECTVYRLKGNLAMSDFNGSEMLEKGWGKNTSS 1322
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 275 EPTSEPRRTSPNTLVMLTRDPAXXXXXXXXXXXXXQSHPHTLPAR-WSHPHTLPAR 439
EPT+EP RT+P T +P+ + P T P R S P T P R
Sbjct: 1099 EPTTEPPRTTPEP----TTEPSRTKPEPTTEPSRTKPEPTTEPPRTTSEPTTEPLR 1150
>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
Length = 420
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 1 VFLAICLCLTVALAAETGKYTPFQYNRVYSTVSPFVYKP 117
VFL + +TV + + GKY P YN + ++ F + P
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,401,630
Number of Sequences: 59808
Number of extensions: 222062
Number of successful extensions: 751
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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