Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31414
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   2.7  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    27   3.6  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   4.8  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    26   6.3  

>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 499  NVHSEIRNGAANIHFKFLNINCGEILT 419
            N  + +RNGAA I F+  N  C ++ T
Sbjct: 1037 NSWASVRNGAAQILFRIFNSQCSKLGT 1063


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -1

Query: 229 GAKDGTLSKIRHFPSFXXXXXXXXXXXLSWVDELTVHPVLSGYW 98
           G +DG + K   FPS              +VD +T   +L  YW
Sbjct: 136 GGEDGYIRKYDFFPSINGDLSLTVAQRHPFVDTVTKAGILLNYW 179


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 496 VHSEIRNGAANIHFKFLNINCGE 428
           +H ++RNG A +HFK   I  GE
Sbjct: 638 LHRKVRNGCALLHFKETEILEGE 660


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 532 LYVSLPSPSVVNVHSEIRNGAANIHFKFLNINCGEILTKLVSKMSFLRIY 383
           L+     P V  ++ E   G  N HF+      GEI   L+ +  FL I+
Sbjct: 303 LFECFDVPVVQYMYQENIIGICNEHFEHFKNESGEIYGVLLHRWCFLEIF 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,777
Number of Sequences: 5004
Number of extensions: 44829
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)