Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31411
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 35 0.015
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 31 0.18
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 31 0.24
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.42
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 30 0.42
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 0.74
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.97
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 28 1.3
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 1.7
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 28 1.7
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 2.2
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 27 3.9
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 27 3.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.9
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 3.9
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 27 3.9
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 27 3.9
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 5.2
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 5.2
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 5.2
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 6.9
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 6.9
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 6.9
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 6.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 6.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 6.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.1
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 9.1
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 25 9.1
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 34.7 bits (76), Expect = 0.015
Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Frame = +1
Query: 334 KPKNIDDAN--EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 507
K +N+++ N E +I + + E+ RLE E+F+ E + K++ I ++ D +
Sbjct: 81 KKRNVEEQNLIEQSITESQRIFSEK-QRLEQERFNRELLEKKR---IEAERQRLKDEEER 136
Query: 508 FVKPTLKKVSKYENKFAKLQKKAAEFNXRNQLKVVKKKEFTLEEEDKEKK 657
K ++K K + + ++++ + N + +LK + EEE +EK+
Sbjct: 137 RKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEAREKR 186
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = +1
Query: 505 KFVKPTLKKVSKYENKFAKLQKKAAEFNXRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPG 684
K K +++++ + ++ A +++K E +++ K KK+ ++D+ K D K K G
Sbjct: 49 KMAKRSVEELKRSADEEASVKRK--EKKSKHEHKK-HKKDKPSADKDRISKKDKKKSKKG 105
Query: 685 DQKVKEEKVE 714
K KEE +E
Sbjct: 106 KSKTKEESIE 115
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 517 PTLKKVSKYENKFAKLQKKAAEFNXRNQLKVVKKKEFTLEEEDKEKKPDW 666
PT KK + ++ K + ++ +E N + VK + L+ ++EK P W
Sbjct: 531 PTAKKNNSFKPKLFRRSRELSEKLCNNWSERVKSPSYQLKVREREKLPAW 580
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.9 bits (64), Expect = 0.42
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = +1
Query: 412 LEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLK-KVSKYENKFAKLQKKAAEFN 588
LE + L + ++KD +I +L ++NDL + TLK E K + K+ A
Sbjct: 149 LEKQVKTLHDLNEQKDKKIKELKERINDLTYDY--ETLKANADDSEGKQTLVSKREAALE 206
Query: 589 XRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEKVE 714
++++ E E K D K + D + + KVE
Sbjct: 207 EFQSKLLIRENEINKRELKMNGKEDDLKKREKDLENRLLKVE 248
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.9 bits (64), Expect = 0.42
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 331 GKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 498
G ID++ +++KR Y ++ ++ LE ++R + EISD +++ L
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 29.1 bits (62), Expect = 0.74
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 391 YHERIARLEDEKFDLEYIVKRKDMEISDLNS---QVNDLRGKFVKPTLKKVSKYENKFAK 561
+H+ + +DE Y++ K ME +L+ QVN + K +K VS + N +A+
Sbjct: 578 FHQLVFSADDEYLASVYLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVW-NTYAQ 636
Query: 562 LQKKAAEF 585
L+ + F
Sbjct: 637 LEHLSGAF 644
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 28.7 bits (61), Expect = 0.97
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +1
Query: 484 QVNDLRGKFVKPTLKKVSK-YENKFAKLQKKAAEFNXRNQL-KVVKKKEFTLEEEDKEKK 657
Q N +RG+ + + K+ K Y+N+ + KK + NQ +++ + + +
Sbjct: 418 QGNFVRGQKLHLEISKIQKKYQNQIENM-KKGSHVTKSNQYSEMIGNLPYPTSSRKRTRS 476
Query: 658 PDWSKGKPGDQK 693
P SKGK D+K
Sbjct: 477 PLMSKGKSYDRK 488
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 532 VSKYENKFAKLQKKAAEFNXRNQLKVVKKKEFTLEEE-DKEKK 657
+ K +NK + Q+ + +N+ K+ ++KE EEE D EKK
Sbjct: 1 MGKIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKK 43
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +1
Query: 373 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYE 546
+R+C+ + + + + +DL++ E S L+ QVNDL + K T +K+S+ +
Sbjct: 897 QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQ 953
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +1
Query: 451 RKDMEISDLNSQVNDLRGKFVKPTLKKVS-KYENKFAKLQKKAAEFNXRNQLKVVKKKEF 627
R ++E +L QVN+L+G V P S ++ N ++ KA ++Q+ K K F
Sbjct: 1423 RLNLEKHNLEKQVNELKGAEVSPQPTGQSLQHVNLAHAIELKA----LKDQINSEKAKMF 1478
Query: 628 TLEEEDKEKKPDWSKGKPGDQKVKEEKV 711
+++ + ++++ + K +KV ++ +
Sbjct: 1479 SVQVQYEKREQELQKRIASLEKVNKDSL 1506
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 544 ENKFAKLQKKAAEFNXRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQK--VKEEKVE 714
+N F K E N + +K K +FT E+K + K P +QK +K++K E
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDE 312
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 340 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 459
+NI D++ED I ++ Y + A DE+ E+ + KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 3.9
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +1
Query: 505 KFVKPTLKKVSKYENKFAKLQKKAAEFNXRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPG 684
K +P++ K K E K K ++A+ +K V+K LE KEK+ K
Sbjct: 206 KIQRPSVIKKDKKEKKEGKPSQEAS-------VKSVEKAPKGLEGAKKEKQNKKEKKDKK 258
Query: 685 DQKVKEEK 708
D+K K+EK
Sbjct: 259 DKKDKKEK 266
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 3.9
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 466 ISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNXRNQLKVVKKKEFTLEEED 645
+S++ QV +L + K+V E+ L KKA + + + K K+KE E +
Sbjct: 1 MSEMEKQVENLSLEAKNEKPKEVILGEDG-KPLSKKALKKLEKEREKEQKRKEREAREAE 59
Query: 646 KEKKP-----DWSKGKPGD 687
++KK D+S GK GD
Sbjct: 60 EKKKREANEIDYSAGKYGD 78
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 448 KRKDMEISDLNSQVNDLRGKFVKPTLKK-VSKYENKFAKLQKKAAEFNXRNQLKVVKKKE 624
K+ D I+ S + G+ + P L + + +E++F Q+ AE+ + Q + + +
Sbjct: 1368 KQTDTGITHFRSGMTT-NGEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQEALQQNRR 1426
Query: 625 FTLEEEDKEKKPDWSKGKP 681
TLE + + W +G P
Sbjct: 1427 LTLE----DLEDSWDRGIP 1441
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 526 KKVSKYENKFAKLQKKAAEFNXRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEE 705
KK + E AKLQ K Q KK + ++ +K+ + D GK D+++ +E
Sbjct: 520 KKARQQEKDMAKLQNKLNMTGSEQQ----KKAKAKVKAMNKKLEKDKQSGKVLDEEIIQE 575
Query: 706 K 708
K
Sbjct: 576 K 576
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 26.6 bits (56), Expect = 3.9
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Frame = +1
Query: 346 IDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRK-DMEISDLNSQVNDLRGKFVKPT 522
ID A E ++R + E +A++E E+ ++ +R D I + LR K K T
Sbjct: 42 IDPALERRLERKRMEAEEELAKIETEEEGGDFERRRAWDWTIEESEKWDQRLRKK--KQT 99
Query: 523 LKKV--SKYENKFAK-----LQKKAAEFNXRNQ-LKVVKKKEFTLEEEDKEKKPDWSKGK 678
++ V S Y ++ +K ++ ++ ++ K K K ++ D+ ++ DW K
Sbjct: 100 IQNVAFSDYHSQASKDYNRGIRDLKPDYEKYDKDKKEEKSKSRSVALYDEAERLDWVSNK 159
Query: 679 PGDQKVKEEKVEA 717
P D++ E VE+
Sbjct: 160 P-DKEHVERLVES 171
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 26.6 bits (56), Expect = 3.9
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Frame = +1
Query: 430 DLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEF----NXRN 597
+L V+R+ + L + +DL +F K + Y K+A + K+ +E +
Sbjct: 70 ELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADEPT 129
Query: 598 QLKVVK--------KKEFTLEEEDKEKKPDWSKGKP 681
+ ++ K KKE T E K++ D +KG P
Sbjct: 130 EEEIKKGEAADENEKKEPTSSESKKQEGGDDTKGIP 165
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2
Query: 694 PSDLPACPSTSQAFSLCLPLPR*IPSFSRPSI 599
PS LP PSTS +F +PL PSFS +I
Sbjct: 150 PSQLPVRPSTSLSFFDDIPLG---PSFSAETI 178
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 209 KPFFAFLALEASSMRLRTSARLRSISACL 123
K FF L E+ +RL+T+ + S+ CL
Sbjct: 325 KAFFTLLESESMEIRLQTATTICSVIGCL 353
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 5.2
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +1
Query: 454 KDMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNXRNQLKVVKKKEFTL 633
+D D +S R K K + KK SK K + + + K+ KKK+
Sbjct: 150 EDRVCEDASSSDEAKREKRKKHSSKKKSK------KKTSTGSALDPKKLEKITKKKKKEH 203
Query: 634 EEEDKEKKPDWSKGKPGDQKVKEEK 708
+++DKE K D++ K++K
Sbjct: 204 KKKDKESSSKKRKSGSSDKEEKKKK 228
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 568 KKAAEFNXRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 690
KK + R +++ K ++DK KP+ GKP D+
Sbjct: 22 KKPLPLHMRTKIREHLNKSDPTVKDDKSAKPELPFGKPADR 62
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 361 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 492
ED+ + D+H A E+EK + K ME+ ++N V+
Sbjct: 23 EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 535 SKYE-NKFAKLQKKAAEFNXRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEE 705
S +E N+FA QK AE + + + + T+E+ + EKKP P D+ + +
Sbjct: 249 SNFESNRFAIAQKADAEIYEVLKKNRILQIDGTIEDNEDEKKP--PVDTPSDEAINSD 304
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 438 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 316
+ +++ + K + M V +PL S F+ +N LRF + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 391 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 489
+HE I +L+D + +L +++K++ IS L V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/92 (20%), Positives = 36/92 (39%)
Frame = +1
Query: 370 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYEN 549
+K + H ++ E + E K I + + ++ + K VK ++ + +
Sbjct: 376 LKESNRTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNNLSS-KDKMVKQVSSQLEEARS 434
Query: 550 KFAKLQKKAAEFNXRNQLKVVKKKEFTLEEED 645
A K AE N + K K+F E+D
Sbjct: 435 SLAHATGKLAEINSERDFQNKKIKDFEKIEQD 466
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 715 PQPFLLLPSDLPACPSTSQAFSLC 644
P P L P P C +T + F LC
Sbjct: 293 PCPLLCHPGPCPPCTATVEKFCLC 316
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 523 LKKVSKYENKFAKLQKKAAEFNXRNQLKVVKK--KEFTLEEEDKEKKPDW 666
LK + + K QKK + N +K K K T+ +D +KPDW
Sbjct: 119 LKLLDSELKSWLKAQKKRSVPNGTQLVKNYNKISKPETVPPDDDPEKPDW 168
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +1
Query: 466 ISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNXRNQLKVVKKKEFTLEEE 642
+SD S+ +G F L++ + + + QK+ N R L V + + +EEE
Sbjct: 6 LSDRRSRFKS-KGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEE 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,874
Number of Sequences: 5004
Number of extensions: 40162
Number of successful extensions: 215
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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