Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31410
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    30   0.44 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.58 
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.1  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.4  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   5.4  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   9.5  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 512 VENLEKKIEFLERDKKGNNIIIYGLKEGEKSTRELIENAKNKF--QKELNLVLEDY 673
           ++  E+KI   ER++K NN    G  E +K T++ + N+K+     K   L LE Y
Sbjct: 587 MQQREEKINSWERERKANN-FFRGHIEIDKKTKDFLNNSKDDLPVPKSPLLTLERY 641


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 512 VENLEKKIEFLERDKKGNNIIIYGLKEGEKSTRELIENAKNKFQ 643
           V++LEK I+ L+ D + +   +   K   K+ RE+I+N K K +
Sbjct: 684 VDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHE 727


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +2

Query: 509 KVENLEKKIEFLERDKKGNNIIIYGLKEGEKSTREL-IENAK-NKFQKELNLVLEDYDIN 682
           +++ LEKK   L ++++ N  ++Y + +    T+EL  EN K + F    N    D   N
Sbjct: 32  QLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKAENEKEDTFLNSFN-ASGDLTAN 90

Query: 683 KIYRIGKPNKATNRDLYFY 739
           K  ++ + ++     L  Y
Sbjct: 91  KKIQLREQSRKLEESLLSY 109


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 95  SVKLSDTECWKSSSRSKYWNSHHFEKKTEV 184
           S ++ D    K    +KY+NS HFE K  V
Sbjct: 108 SHRIKDKITTKCKGTTKYFNSRHFEIKNAV 137


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 680 LYRNPLRLNLIPFGIYFSH 624
           L R+P RL ++PFGI  +H
Sbjct: 151 LVRHPHRLKMLPFGIQSAH 169


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 289 LVAVNVSCHVTLFDRSIVPTL*SNEFLEIK 200
           LVAVN  CH+ ++   +V    S +F E K
Sbjct: 126 LVAVNPYCHLPIYGDDVVRKYQSKQFKETK 155


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 6/21 (28%), Positives = 17/21 (80%)
 Frame = +2

Query: 554  KKGNNIIIYGLKEGEKSTREL 616
            ++G +++++G++EG +  RE+
Sbjct: 2068 RRGQSLVVWGIQEGRQCAREI 2088


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,250
Number of Sequences: 5004
Number of extensions: 61045
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)